Skip to main content

Advertisement

Table 1 Description of bin distributions in the MapMan platform.

From: In silico comparison of transcript abundances during Arabidopsis thaliana and Glycine max resistance to Fusarium virguliforme

Bin Name Elements p-value
1.1 PS.lightreaction 59 0.04
1.1.4 PS.lightreaction.ATP synthase 6 0.01
  TCA/org. transformation.other organic acid   
8.2.11 transformaitons.atp-citrate lyase 2 0.03
10.2 cell wall.cellulose synthesis 14 0.01
  lipid metabolism.FA synthesis and FA elongation.long   
11.1.9 chain fatty acid CoA ligase 5 0.004
12 N-metabolism 13 0.03
12.2 N-metabolism.ammonia metabolism 8 0.04
  amino acid metabolism.synthesis.aspartate   
13.1.3.4 family.methionine 9 0.046
16.1.4 secondary metabolism.isoprenoids.carotenoids 6 0.04
  secondary metabolism.phenylpropanoids.lignin   
16.2.1 biosynthesis 18 0.006
16.7 secondary metabolism.wax 4 0.027
16.8.2 secondary metabolism.flavonoids.chalcones 3 0.006
  hormone metabolism.brassinosteroid.synthesis-   
17.3.1.1.1 degradation.BRs.DET2 3 0.02
19.1 tetrapyrrole synthesis.magnesium chelatase 2 0.03
26.3 misc.gluco-, galacto- and mannosidases 22 0.01
27.1 RNA.processing 71 0.01
  RNA.regulation of transcription.TCP transcription factor   
27.3.29 family 6 0.04
29.1 protein.aa activation 32 0.02
29.2 protein.synthesis 200 0.004
  protein.synthesis.chloroplast/mito – plastid ribosomal   
29.2.1 protein 36 0.007
  protein.synthesis.chloroplast/mito – plastid ribosomal   
29.2.1.1 protein.plastid 21 0.04
29.2.2 protein.synthesis.misc ribososomal protein 106 0.01
29.4 protein.postranslational modification 186 0.03
  protein.postranslational modification.kinase.receptor like   
29.4.1.51 cytoplasmatic kinase I 2 0.03
29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX 58 0.01
29.6 protein.folding 25 0.006
30 signalling 267 0.02
30.3 signalling.calcium 59 0.01
35 not assigned 2150 0.02
35.2 not assigned.unknown 1191 0.003
  1. The bin number of the microarray was also denoted from 1–100 and it was only shown for the bins with significant changes in transcript abundance at P < 0.05.