Table 1 Reads (millions and percentages) mapped on the human transcriptome and the M. bovis BCG genome
| Â | Â | Human transcriptome | M. bovis BCG genome | Â | ||
|---|---|---|---|---|---|---|
Dataset | Description | M of reads | % | M of reads | % | Total |
THP | Uninfected THP-1 cells | 30.9 | 100 | – | – | 30.9 |
EGB | M. bovis BCG bacilli | – | – | 168 | 100 | 168 |
SPI | Mixed THP-1 and M. bovis BCG RNA | 31.8 | 91.0 | 3.16 | 9.0 | 35.0 |
IF0 | Infected THP-1 cells replicate 0 | 21.5 | 98.0 | 0.45 | 2.0 | 21.9 |
IF1 | Infected THP-1 cells replicate 1 | 38.2 | 96.0 | 1.57 | 4.0 | 39.7 |
IF2 | Infected THP-1 cells replicate 2 | 28.0 | 96.3 | 1.07 | 3.7 | 29.0 |
IF1ER | Infected THP-1 cells replicate 1 enriched for M. bovis BCG bacilli | 18.0 | 74.7 | 6.09 | 25.3 | 24.0 |
IF2ER | Infected THP-1 cells replicate 2 enriched for M. bovis BCG bacilli | 26.0 | 88.6 | 3.35 | 11.4 | 29.4 |