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Table 3 QTL for social, emotional and production traits in the F2 population

From: A medium density genetic map and QTL for behavioral and production traits in Japanese quail

Chromosome Traits Position (cM) Nearest markers Confidence interval (cM) Flanking markers Model Level of significance (1) QTL effect (2) Sires (3) Dams
CJA1 HeadNO 132 snp_soc_3409-snp_soc_3085 131-133 snp_soc_3409-snp_soc_3085 S + D P < 0.01 0.49[0.15; 1.71] 2 5
WEgg 193 snp_soc_3301-snp_soc_3547 179-203 snp_soc_3733-snp_soc_4023 S P < 0.01 0.28[0.20; 0.49] 5 -
AgrP 236 snp_soc_3475-snp_soc_2139 224-245 snp_soc_4684-snp_soc_2782 S P = 0.025 0.40[0.28; 0.69] 3 -
DistSR 281 snp_soc_4666-snp_soc_2881 278-285 snp_soc_4127-snp_soc_4345 S + D P = 0.037 0.31[0.18; 0.48] 3 9
W65 317 snp_soc_3213-snp_soc_4360 316-319 snp_soc_3481-snp_soc_3247 S + D P < 0.01 0.51[0.17; 1.512] 3 9
W17 319 snp_soc_4529-snp_soc_3247 316-328 snp_soc_3481-snp_FSIEL0M01BAIJK_30 S P < 0.01 0.21[0.10; 0.46] 5 -
W17 325 snp_F3SDQUK02BW99J_142-snp_soc_4532 323-325 snp_soc_1488-snp_FJXLD7H02JJLTX-0_66 S + D P < 0.01 0.39[0.15; 0.79] 5 9
CJA2 AgrP 141 snp_soc_0368-snp_soc_0890 131-153 snp_FSIEL0M02D0BGS_129-snp_soc_2344 S P = 0.039 0.28[0.16; 0.39] 5 -
DistSR 149 snp_soc_1978-snp_soc_3824 146-155 snp_soc_4483-snp_soc_4405 S + D P = 0.043 0.36[0.16; 0.65] 3 6
DistSR 155 snp_soc_4405-snp_soc_3819 152-159 snp_soc_1978-snp_soc_2372 S P = 0.024 0.22[0.10; 0.36] 4 -
DistIso 319 snp_soc_3054-snp_soc_0012 302-337 snp_soc_4310-snp_soc_2553 S P = 0.038 0.21[0.18; 0.26] 4 -
CJA3 WEgg 156 snp_soc_4141-snp_soc_3447 154-158 snp_soc_4141-snp_soc_3447 S + D P < 0.01 0.53[0.18; 1.49] 5 3
W65 156 snp_soc_4141-snp_soc_3447 148-161 snp_soc_0755-snp_soc_0929 S P < 0.01 0.21[0.12; 0.32] 6 -
NEgg 225 snp_soc_4257-snp_soc_2884 215-229 snp_soc_4257-snp_soc_3740 S P = 0.025 0.31[0.15; 0.52] 5 -
AFEgg 302 snp_soc_3800-snp_soc_4350 294-313 snp_soc_4338-snp_soc_3680 S P = 0.026 0.39[0.27; 0.48] 4 -
CJA4 DistIso 105 snp_soc_2929-snp_soc_3811 100-118 snp_soc_0843-snp_soc_3328 S + D P < 0.01 0.26[0.16; 0.70] 4 8
CJA5 W17 54 snp_soc_0024-snp_FSIEL0M02D2UBC_47 45-75 snp_soc_1561-snp_soc_2224 S P < 0.01 0.24[0.10; 0.43] 4 -
TI 59 snp_soc_3635-snp_soc_2699 38-68 snp_soc_2028-snp_soc_0641 S P = 0.050 0.25[0.16; 0.34] 3 -
W65 88 snp_soc_3485-snp_FSIEL0M02DEXEG_146 83-99 snp_soc_0380-snp_soc_3299 S + D P < 0.01 0.30[0.12; 0.60] 4 9
W17 90 snp_FSIEL0M02DEXEG_146-snp_ble_0738 87-101 snp_soc_3485-snp_ble_0738 S + D P < 0.01 0.38[0.11; 0.80] 4 11
W65 97 snp_soc_3485-snp_FSIEL0M02DEXEG_146 56-115 snp_FSIEL0M02D2UBC_47-snp_FSIEL0M02D7AG8_195 S P < 0.01 0.26[0.17; 0.38] 4 -
CJA7 DistIso 96 snp_soc_2405-snp_soc_1537 92-99 snp_soc_2405-snp_soc_1826 S + D P < 0.01 0.29[0.11; 0.56] 4 12
CJA8 W17 41 snp_soc_2116-snp_soc_2490 37-44 snp_soc_0876-snp_soc_1323 S + D P = 0.021 0.30[0.15; 0.74] 3 10
W17 56 snp_soc_2933-snp_soc_2335 53-60 snp_soc_2074-snp_soc_1161 S P = 0.026 0.23[0.19; 0.26] 4 -
HeadNO 65 snp_soc_1161-snp_FSIEL0M02DE4EL_249 53-69 snp_soc_2074-snp_soc_1987 S P = 0.024 0.19[0.13; 0.29] 5 -
CJA9 DistSR 42 snp_soc_1270-snp_soc_0268 39-53 snp_soc_0028-snp_soc_0558 S + D P < 0.01 0.43[0.19; 1.33] 3 7
DistSR 55 snp_soc_2491-snp_soc_0558 37-60 snp_soc_0028-snp_soc_2117 S P = 0.016 0.28[0.11; 0.49] 2 -
CJA10 DistIso 11 snp_soc_2706-snp_soc_0126 8-13 snp_FSIEL0M02C42PC_418-snp_FSIEL0M03HDV3S_67 S + D P = 0.035 0.36[0.10; 0.81] 2 9
W65 21 snp_soc_0359-snp_soc_2673 17-22 snp_soc_2915-snp_soc_1219 S + D P = 0.034 0.42[0.13; 1.25] 3 8
W17 30 snp_soc_0939-snp_FQU5R7M02IBV7P-0 27-31 snp_soc_0968-snp_FQU5R7M02IBV7P-0_110 S + D P < 0.01 0.37[0.18; 0.65] 1 9
CJA11 TI 1 snp_soc_0708-snp_soc_1139 0-6 snp_soc_0157-snp_soc_2036 S + D P < 0.01 0.35[0.18; 0.58] 4 11
TI 5 snp_soc_0003-snp_soc_1569 0-26 snp_soc_0157-snp_soc_1166 S P = 0.018 0.21[0.15; 0.38] 5 -
DistSR 47 snp_soc_1642-snp_soc_1220 34-49 snp_soc_1436-snp_FSIEL0M01BMPFH_253 S P = 0.023 0.21[0.13; 0.34] 4 -
CJA13 DistSR 4 snp_soc_0855-snp_FSIEL0M02D43ZD_185 0-15 snp_soc_1438-snp_soc_1000 S P = 0.031 0.21[0.14; 0.28] 4 -
CJA15 DistIso 63 snp_soc_1598-snp_ble_0416 60-65 snp_soc_2236-snp_ble_0416 S P = 0.033 0.31[0.18; 0.52] 3 -
CJA18 NEgg 3 snp_soc_0250-snp_soc_0714 0-22 snp_soc_2064-snp_soc_0279 S + D P = 0.025 0.45[0.19; 1.41] 4 -
  W65 18 snp_soc_2042-snp_soc_1172 13-26 snp_soc_2085-snp_soc_1907 S + D P < 0.01 0.33[0.19; 0.50] 3 9
  W65 42 snp_soc_0424-snp_soc_0163 20-50 snp_soc_1172-snp_soc_0772 S P < 0.01 0.23[0.12; 0.38] 4 -
  WEgg 61 snp_soc_0010-snp_soc_0395 57-75 snp_soc_1648-snp_soc_1792 S P < 0.01 0.29[0.15; 0.51] 5 -
  WEgg 62 snp_soc_0395-snp_soc_0042 58-73 snp_soc_0010-snp_FZVM8I102DNHYX_129 S + D P < 0.01 0.34[0.13; 0.79] 5 3
CJA19 AFEgg 4 snp_soc_0193-snp_soc_0715 0-10 snp_soc_1697-snp_soc_0483 S + D P = 0.029 0.36[0.24; 0.51] 5 4
DistIso 8 snp_soc_0715-snp_soc_0483 6-16 snp_soc_0193-snp_soc_1227 S + D P = 0.020 0.29[0.14; 0.50] 4 9
DistIso 14 snp_soc_0396-snp_soc_1227 0-20 snp_soc_1697-snp_soc_1227 S P = 0.039 0.23[0.10; 0.29] 4 -
CJA23 HeadNO 57 snp_soc_1394-snp_ble_033 45-63 snp_soc_1286-snp_FSIEL0M02EPU6F_133 S P < 0.01 0.20[0.14; 0.30] 5 -
CJA26 DistSR 21 snp_FQU5R7M02I6ZE8-0_225-snp_soc_1180 19-27 snp_soc_1867-snp_soc_0288 S P = 0.025 0.30[0.15; 0.46] 3 -
  1. (1)Level of significance of the QTL at the chromosome level; indicates that the QTL is genome-wide significant; (2)The effect of the QTL was estimated as the average of the significant parent’s effects (P < 0.05) and expressed in phenotypic standard deviation. The minimum and the maximum effects are given between square brackets; (3)Number of significant parents.