Comparative transcriptomics of a complex of four European pine species

BMC Genomics

Table 2 Statistics for de novo transcriptome assembly of the reference sample (2_GT_31)

Assembly metric	Raw assembly generated from Trinity	Unigene set
Max contig length	16652	16652
Num contigs >100	151932	40798
Total bases in contigs >100	119849194	61246267
N50 for contigs >100	1555	2118
Contigs >100 in N50	22593	9640
GC contigs >100	41.8	42.5
nonATGC in contigs >100	0	0
Mean length for contigs >100	788.8	1501.2

N50 - the contig length for which the collection of all contigs of equal or longer length produces half the bases of the contigs.
Non ATGC - non ATGC bases (such as Ns).

ISSN: 1471-2164