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Table 2 Statistics for de novo transcriptome assembly of the reference sample (2_GT_31)

From: Comparative transcriptomics of a complex of four European pine species

Assembly metric Raw assembly generated from Trinity Unigene set
Max contig length 16652 16652
Num contigs >100 151932 40798
Total bases in contigs >100 119849194 61246267
N50 for contigs >100 1555 2118
Contigs >100 in N50 22593 9640
GC contigs >100 41.8 42.5
nonATGC in contigs >100 0 0
Mean length for contigs >100 788.8 1501.2
  1. N50 - the contig length for which the collection of all contigs of equal or longer length produces half the bases of the contigs.
  2. Non ATGC - non ATGC bases (such as Ns).