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Table 3 Mapping statistics of the samples to the reference transcriptome sequence (2_GT_31)

From: Comparative transcriptomics of a complex of four European pine species

Sample ID Species Total reads Mapped reads % Mapped reads % Duplicate reads % Mapped reads as proper pairs Number of SNPs
1_SD_30 P. sylvestris 31116472 26922787 86.52 26.36 84.14 67817
2_GT_31 P. sylvestris 258401512 229042493 88.64 43.22 85.34 81519
3_Punk_39 P. sylvestris 37849782 31980676 84.49 34.37 80.21 63874
4_Jar_43 P. sylvestris 38970706 31951845 81.99 19.34 79.47 94021
5_Trev_37 P. sylvestris 45140044 38150182 84.52 19.44 81.73 95814
6_SC_5 P. mugo 43752078 35804512 81.83 24.08 78.50 116762
7_BH_9 P. mugo 32600000 26565484 81.49 26.23 78.40 103818
8_Abr_16 P. mugo 40104880 33111153 82.56 29.18 78.19 100602
9_Alps_12 P. mugo 52934684 43411825 82.01 23.36 78.67 130942
10_Sdt_1 P. mugo 69248828 57560565 83.12 28.02 80.03 138989
11_CC_28 P. uncinata 34805254 28627271 82.25 16.74 79.34 102037
12_LaT_23 P. uncinata 30291214 24678075 81.47 36.80 78.06 87181
13_VdR_17 P. uncinata 45834740 36942040 80.60 18.27 77.85 118800
14_Val_24 P. uncinata 48550644 39819426 82.02 21.98 79.12 115050
15_Weg_57 P. uliginosa 52718596 42948249 81.47 18.33 78.55 127068
16_Bat_59 P. uliginosa 40729720 33913094 83.26 21.04 80.38 116297
17_Mit_58 P. uliginosa 69457322 57212028 82.37 22.07 79.37 147646
Merged All 976529136 817402576 83.70 26.12 80.58 164104
  1. Sample ID with reference to Table 1.