From: Comparative transcriptomics of a complex of four European pine species
Sample ID | Species | Total reads | Mapped reads | % Mapped reads | % Duplicate reads | % Mapped reads as proper pairs | Number of SNPs |
---|---|---|---|---|---|---|---|
1_SD_30 | P. sylvestris | 31116472 | 26922787 | 86.52 | 26.36 | 84.14 | 67817 |
2_GT_31 | P. sylvestris | 258401512 | 229042493 | 88.64 | 43.22 | 85.34 | 81519 |
3_Punk_39 | P. sylvestris | 37849782 | 31980676 | 84.49 | 34.37 | 80.21 | 63874 |
4_Jar_43 | P. sylvestris | 38970706 | 31951845 | 81.99 | 19.34 | 79.47 | 94021 |
5_Trev_37 | P. sylvestris | 45140044 | 38150182 | 84.52 | 19.44 | 81.73 | 95814 |
6_SC_5 | P. mugo | 43752078 | 35804512 | 81.83 | 24.08 | 78.50 | 116762 |
7_BH_9 | P. mugo | 32600000 | 26565484 | 81.49 | 26.23 | 78.40 | 103818 |
8_Abr_16 | P. mugo | 40104880 | 33111153 | 82.56 | 29.18 | 78.19 | 100602 |
9_Alps_12 | P. mugo | 52934684 | 43411825 | 82.01 | 23.36 | 78.67 | 130942 |
10_Sdt_1 | P. mugo | 69248828 | 57560565 | 83.12 | 28.02 | 80.03 | 138989 |
11_CC_28 | P. uncinata | 34805254 | 28627271 | 82.25 | 16.74 | 79.34 | 102037 |
12_LaT_23 | P. uncinata | 30291214 | 24678075 | 81.47 | 36.80 | 78.06 | 87181 |
13_VdR_17 | P. uncinata | 45834740 | 36942040 | 80.60 | 18.27 | 77.85 | 118800 |
14_Val_24 | P. uncinata | 48550644 | 39819426 | 82.02 | 21.98 | 79.12 | 115050 |
15_Weg_57 | P. uliginosa | 52718596 | 42948249 | 81.47 | 18.33 | 78.55 | 127068 |
16_Bat_59 | P. uliginosa | 40729720 | 33913094 | 83.26 | 21.04 | 80.38 | 116297 |
17_Mit_58 | P. uliginosa | 69457322 | 57212028 | 82.37 | 22.07 | 79.37 | 147646 |
Merged | All | 976529136 | 817402576 | 83.70 | 26.12 | 80.58 | 164104 |