From: RiTE database: a resource database for genus-wide rice genomics and evolutionary biology
Species | Genome Type | Est. Genome Size | Illumina Reads | Assembled Genome | |||||
---|---|---|---|---|---|---|---|---|---|
Mb | Ref.a | Avg. Read Length (bp) | # of Reads (M) | Source | Statusb | Size(Mb) | Source | ||
O. sativa. ssp. japonica | AA | 389 | 1 | 97 | 6.5 | R. Wing – Unpubl. | chr | 373.2 | |
O. rufipogon | AA | 439 | 3 | 98 | 6.8 | SRA ERR120613 | chr | 338.0 | EMBL-EBI PRJEB4137 |
O. sativa. ssp. indica | AA | 466 | 2 | 100 | 7.0 | R. Wing – Unpubl. | chr | 374.5 | |
O. nivara | AA | 448 | 3 | 79 | 8.7 | Y. Hsing – Unpubl. | chr | 337.9 | NCBI AWHD00000000 |
O. glaberrima | AA | 357 | 4 | 75 | 7.2 | R. Wing – Unpubl. | chr | 285.0 | NCBI ADWL00000000 |
O. barhii | AA | 411 | 5 | 116 | 5.0 | R. Wing – Unpubl. | chr | 308.3 | NCBI ABRL00000000 |
O. glumipatula | AA | 464 | 5 | 101 | 6.9 | R. Wing – Unpubl. | chr | 372.9 | NCBI ALNU02000000 |
O. longistaminata | AA | 352 | 5 | 75 | 8.0 | W. Wang – Unpubl. | scf | 344.6 | W. Wang – Unpubl. |
O. meridionalis | AA | 435 | 5 | 99 | 5.9 | R. Wing – Unpubl. | chr | 335.7 | NCBI ALNW00000000 |
O. punctata | BB | 425 | 3 | 97 | 6.6 | R. Wing – Unpubl. | chr | 393.8 | NCBI AVCL00000000 |
O. officinalis | CC | 651 | 3 | 107 | 9.6 | N. Kurata – Unpubl. | - | - | - |
O. brachyantha | FF | 362 | 3 | 100 | 5.5 | SRA SRR350707 | chr | 260.8 | NCBI AGAT01000000 |
Leersia perrieri | - | 323 | 6 | 100 | 4.9 | R. Wing – Unpubl. | chr | 266.7 | NCBI ALNV00000000 |