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Table 3 List of the predicted targets of differentially expressed known miRNAs

From: Identification of miRNAs with potential roles in regulation of anther development and male-sterility in 7B-1 male-sterile tomato mutant

miRNA Target gene
SGN accession no Annotation
miR166 Solyc02g024070.2.1 Class III HD-Zipa
  Solyc03g006970.1.1 Subtilisin-like protease
  Solyc03g116850.2.1 Cyclic nucleotide-binding
  Solyc03g025740.2.1 Zinc finger
  Solyc07g045410.1.1 Pentatricopeptide repeat-containing protein
miR390 Solyc00g009090.2.1 Receptor-like kinasea
  Solyc09g091850.2.1 Beta-glucosidase
  Solyc11g016930.1.1 serine/threonine-protein kinase
miR159 Solyc01g009070.2.1 GAMYBL1
  Solyc01g102510.2.1 WD-40
  Solyc02g078670.2.1 COP1-Interacting Protein 7
  Solyc02g090160.2.1 G protein
  Solyc03g043890.2.1 Aminotransferases
  Solyc06g073640.2.1 GAMYBL2
  Solyc07g052640.2.1 Glycosyltransferase-like protein
  Solyc09g082890.1.1 Calcium-transporting ATPase 1
  Solyc10g019260.1.1 MYB39-like
  Solyc11g072060.1.1 MYB
  Solyc01g005330.2.1 microtubule associated protein Type 1
miR530 Solyc01g091550.2.1 Aspartyl protease family
  Solyc02g083460.2.1 Aspartyl protease family protein
  Solyc02g084520.2.1 Zinc finger CCCH domain-containing protein 19
  Solyc02g085520.2.1 Adenylosuccinate synthetase, chloroplastic
  Solyc02g086930.2.1 Homeobox-leucine zipper-like protein
  Solyc03g019920.1.1 Harpin-induced protein-like
  Solyc03g093230.2.1 Aquaporin
  Solyc04g009450.1.1 Ethylene-responsive transcription factor 4
  Solyc04g081070.2.1 Heat shock protein DnaJ
  Solyc06g063170.2.1 glutamate-like receptor
  Solyc07g006030.2.1 Protein TIF31 homolog
  Solyc08g007500.2.1 Pentatricopeptide repeat-containing protein
  Solyc11g062220.1.1 PHD-finger domain protein
  Solyc12g008690.1.1 Iaa-amino acid hydrolase 11
miR393 Solyc01g057310.2.1 Kinesin (Centromeric protein)-like protein
  Solyc11g006310.1.1 GEX1
  Solyc02g088800.1.1 Exocyst complex component 7
  Solyc06g068840.2.1 Copine-3
  Solyc08g081890.2.1 ABC transporter
miR396 Solyc01g066500.1.1 MAD-box transcription factor 22
  Solyc00g105750.1.1 Mutator-like transposasea
  Solyc00g071180.2.1 Cysteine proteinase inhibitor
  Solyc01g090270.2.1 b-ZIP transcription factor
  Solyc01g094930.2.1 CAAX prenyl protease 1
  Solyc01g110450.2.1 Aldo/keto reductase subgroup
  Solyc02g023950.2.1 Receptor like kinase
  Solyc02g083190.1.1 F-box protein
  Solyc03g058930.2.1 SPFH domain/Band 7 family protein
  Solyc03g114150.2.1 Aldehyde dehydrogenase
  Solyc03g118350.2.1 Actin-fragmin kinase
  Solyc05g053090.1.1 GRAS transcription factora
  Solyc06g007320.2.1 Ubiquitin-activating enzyme E1
  Solyc06g059760.2.1 Transcriptional corepressor SEUSS
  Solyc07g019640.1.1 Transposase
  Solyc07g045480.2.1 Phytochrome F
  Solyc09g057910.2.1 N-alpha-acetyltransferase 25
  Solyc10g047270.1.1 Potassium transporter family protein
  Solyc11g006680.1.1 Pentatricopeptide repeat-containing protein
  Solyc11g020100.1.1 Cc-nbs-lrr, resistance protein
  Solyc12g013840.1.1 G-protein beta WD-40 repeat
miR164 Solyc03g115850.2.1 No Apical Meristem (NAM)a
  Solyc06g084350.2.1 U6 snRNA-associated Sm-like protein LSm2
  Solyc11g066150.1.1 Bifunctional polymyxin resistance protein ArnA
miR167 Solyc02g037530.2.1 Auxin response factor 8a
  Solyc01g010020.2.1 Flagellar calcium-binding protein
  Solyc01g086900.2.1 tRNA/rRNA methyltransferase
  Solyc01g099790.2.1 Zinc finger
  Solyc03g007790.2.1 Serine/threonine protein kinase
  Solyc03g117700.1.1 Folate/biopterin transporter
  Solyc08g065360.2.1 Glutathione-regulated potassium-efflux system protein
  Solyc08g069010.2.1 Pentatricopeptide repea
miR168 Solyc01g108250.2.1 Vacuolar import and degradation protein
  Solyc04g078130.2.1 Clathrin-coat assembly protein-like
  Solyc06g053710.2.1 Ethylene receptor
  Solyc06g060160.1.1 C2 domain-containing protein
  Solyc06g076700.1.1 Unknown protein
  Solyc09g018560.1.1 Ulp1 protease family
  Solyc09g090650.2.1 Zinc finger protein
miR8006 Solyc01g008530.2.1 Cinnamoyl CoA reductase-like proteina
  Solyc01g008790.2.1 Phosphoesterase family protein
  Solyc04g078250.2.1 Manganese transport protein mntH
  Solyc05g014050.2.1 Inner membrane protein
  Solyc07g049440.2.1 GDSL esterase/lipase
  Solyc08g078650.2.1 Glycosyl transferase
  Solyc09g064850.2.1 Glutathione peroxidase
  Solyc10g009520.2.1 Dihydroflavonol-4-reductase
  Solyc12g013850.1.1 Glycosyl transferase
  Solyc12g088130.1.1 BHLH transcription factor
  Solyc12g096640.1.1 RNA-binding protein
  1. aindicates targets which have identified from multiple loci