Table 3 List of the predicted targets of differentially expressed known miRNAs

miR166

Solyc02g024070.2.1

Class III HD-Zip^a

Solyc03g006970.1.1

Subtilisin-like protease

Solyc03g116850.2.1

Cyclic nucleotide-binding

Solyc03g025740.2.1

Zinc finger

Solyc07g045410.1.1

Pentatricopeptide repeat-containing protein

miR390

Solyc00g009090.2.1

Receptor-like kinase^a

Solyc09g091850.2.1

Beta-glucosidase

Solyc11g016930.1.1

serine/threonine-protein kinase

miR159

Solyc01g009070.2.1

GAMYBL1

Solyc01g102510.2.1

WD-40

Solyc02g078670.2.1

COP1-Interacting Protein 7

Solyc02g090160.2.1

G protein

Solyc03g043890.2.1

Aminotransferases

Solyc06g073640.2.1

GAMYBL2

Solyc07g052640.2.1

Glycosyltransferase-like protein

Solyc09g082890.1.1

Calcium-transporting ATPase 1

Solyc10g019260.1.1

MYB39-like

Solyc11g072060.1.1

MYB

Solyc01g005330.2.1

microtubule associated protein Type 1

miR530

Solyc01g091550.2.1

Aspartyl protease family

Solyc02g083460.2.1

Aspartyl protease family protein

Solyc02g084520.2.1

Zinc finger CCCH domain-containing protein 19

Solyc02g085520.2.1

Adenylosuccinate synthetase, chloroplastic

Solyc02g086930.2.1

Homeobox-leucine zipper-like protein

Solyc03g019920.1.1

Harpin-induced protein-like

Solyc03g093230.2.1

Aquaporin

Solyc04g009450.1.1

Ethylene-responsive transcription factor 4

Solyc04g081070.2.1

Heat shock protein DnaJ

Solyc06g063170.2.1

glutamate-like receptor

Solyc07g006030.2.1

Protein TIF31 homolog

Solyc08g007500.2.1

Pentatricopeptide repeat-containing protein

Solyc11g062220.1.1

PHD-finger domain protein

Solyc12g008690.1.1

Iaa-amino acid hydrolase 11

miR393

Solyc01g057310.2.1

Kinesin (Centromeric protein)-like protein

Solyc11g006310.1.1

GEX1

Solyc02g088800.1.1

Exocyst complex component 7

Solyc06g068840.2.1

Copine-3

Solyc08g081890.2.1

ABC transporter

miR396

Solyc01g066500.1.1

MAD-box transcription factor 22

Solyc00g105750.1.1

Mutator-like transposase^a

Solyc00g071180.2.1

Cysteine proteinase inhibitor

Solyc01g090270.2.1

b-ZIP transcription factor

Solyc01g094930.2.1

CAAX prenyl protease 1

Solyc01g110450.2.1

Aldo/keto reductase subgroup

Solyc02g023950.2.1

Receptor like kinase

Solyc02g083190.1.1

F-box protein

Solyc03g058930.2.1

SPFH domain/Band 7 family protein

Solyc03g114150.2.1

Aldehyde dehydrogenase

Solyc03g118350.2.1

Actin-fragmin kinase

Solyc05g053090.1.1

GRAS transcription factor^a

Solyc06g007320.2.1

Ubiquitin-activating enzyme E1

Solyc06g059760.2.1

Transcriptional corepressor SEUSS

Solyc07g019640.1.1

Transposase

Solyc07g045480.2.1

Phytochrome F

Solyc09g057910.2.1

N-alpha-acetyltransferase 25

Solyc10g047270.1.1

Potassium transporter family protein

Solyc11g006680.1.1

Pentatricopeptide repeat-containing protein

Solyc11g020100.1.1

Cc-nbs-lrr, resistance protein

Solyc12g013840.1.1

G-protein beta WD-40 repeat

miR164

Solyc03g115850.2.1

No Apical Meristem (NAM)^a

Solyc06g084350.2.1

U6 snRNA-associated Sm-like protein LSm2

Solyc11g066150.1.1

Bifunctional polymyxin resistance protein ArnA

miR167

Solyc02g037530.2.1

Auxin response factor 8^a

Solyc01g010020.2.1

Flagellar calcium-binding protein

Solyc01g086900.2.1

tRNA/rRNA methyltransferase

Solyc01g099790.2.1

Zinc finger

Solyc03g007790.2.1

Serine/threonine protein kinase

Solyc03g117700.1.1

Folate/biopterin transporter

Solyc08g065360.2.1

Glutathione-regulated potassium-efflux system protein

Solyc08g069010.2.1

Pentatricopeptide repea

miR168

Solyc01g108250.2.1

Vacuolar import and degradation protein

Solyc04g078130.2.1

Clathrin-coat assembly protein-like

Solyc06g053710.2.1

Ethylene receptor

Solyc06g060160.1.1

C2 domain-containing protein

Solyc06g076700.1.1

Unknown protein

Solyc09g018560.1.1

Ulp1 protease family

Solyc09g090650.2.1

Zinc finger protein

miR8006

Solyc01g008530.2.1

Cinnamoyl CoA reductase-like protein^a

Solyc01g008790.2.1

Phosphoesterase family protein

Solyc04g078250.2.1

Manganese transport protein mntH

Solyc05g014050.2.1

Inner membrane protein

Solyc07g049440.2.1

GDSL esterase/lipase

Solyc08g078650.2.1

Glycosyl transferase

Solyc09g064850.2.1

Glutathione peroxidase

Solyc10g009520.2.1

Dihydroflavonol-4-reductase

Solyc12g013850.1.1

Glycosyl transferase

Solyc12g088130.1.1

BHLH transcription factor

Solyc12g096640.1.1

RNA-binding protein