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Table 1 Statistical analysis of sequencing reads from the CK and MJ100 sRNA libraries in L. aurea

From: Identification and differential regulation of microRNAs in response to methyl jasmonate treatment in Lycoris aurea by deep sequencing

Category CK1 CK2 CK3 MJ1 MJ2 MJ3
Total Unique Total Unique Total Unique Total Unique Total Unique Total Unique
Clean reads 3,776,867 1,094,182 4,648,051 1,103,602 1,513,368 434,141 3,680,211 1,634,253 3,342,240 825,583 4,076,785 1,353,202
miRNA 149,287 402 200,761 408 59,857 322 118,396 318 134,827 389 158,220 385
rRNA 133,671 25,564 159,974 24,172 51,309 13,645 155,927 32,284 118,064 18,606 156,015 26,776
tRNA 69,481 10,396 101,905 10,616 31,025 5,776 102,000 15,393 57,567 7,849 84,561 12,534
snRNA 13,089 5,210 11,528 4,169 4,171 2,050 11,902 6,156 8,452 3,514 12,324 5,278
Cis-reg 6,266 2,201 8,348 2,110 2,740 961 7,908 3,629 6,507 1,594 7,601 2,757
repeats 113 99 86 73 37 37 320 286 69 58 174 151
gene 1,584,018 (42.94 %) 166,386 (15.21 %) 2,188,034 (47.07 %) 192,626 (17.45 %) 735,521 (48.60 %) 82,958 (19.11 %) 1,106,681 (30.07 %) 206,407 (12.63 %) 1,611,524 (48.22 %) 141,584 (17.15 %) 1,623,832 (39.83 %) 196,857 (14.55 %)
others 26,637 6,610 34,754 6,723 10,591 2,976 27,716 9,395 22,419 5,020 28,787 7,799
unannotated 1,794,305 877314 1,942,661 862,705 618,117 325,416 2,149,361 1,360,385 1,382,811 646,969 2,005,271 1,100,665