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Table 2 Missense mutations in selective sweeps. Several missense mutations were discovered in the selective sweeps. The table lists resequencing derived reference alleles frequencies in the northern (N) and southern (S) populations of salmon in Norway. SNPs from Chr 5 and Chr 25 selected for genotyping are shown in bold

From: Atlantic salmon populations reveal adaptive divergence of immune related genes - a duplicated genome under selection

Chr Position -log10P Reference allele frequency (S/N) Ref/alt nucleotide Ref/alt amino acid Gene Description of gene
5 a 22,641,277 29.6 1.00/0.34 A (G) Phe (Ser) nkrf NF-kB repressing factor.
5 22,691,092 27.5 0.95/0.29 G (T) Ala (Ser) sowahc Unknown function.
5 a 22,708,279 28.8 1.00/0.33 C (T) Val (Met) nkap NF-kB activating protein.
5 a 22,719,453 19.4 0.79/0.27 T (A) Val (Glu) zbtb33 Transcriptional regulator.
10b 76,272,006 18.7 0.94/0.46 T (G) Asp (Glu) anln Actin binding protein.
10 76,272,245 18.4 0.96/0.49 C (A) Pro (Gln) anln Same as above.
10 76,278,414 14.5 0.32/0.76 G (A) Ala (Thr) anln Same as above.
13 78,341,469 24.1 0.97/0.43 G (A) Gly (Arg) trpc2 Transient Receptor Cation Channel.
13 78,349,376 20.3 0.98/0.40 T (G) Glu (Ala) rrm1 Ribonucleoside-diphosphate reductase.
13b 78,413,379 20.7 0.98/0.48 A (T) Gln (Leu) rb1 Regulator of entry into cell division.
14 64,739,123 20.0 0.55/0.01 T (C) Asn (Ile) adnp2 Transcription factor.
14b 64,988,859 11.9 0.36/0.79 A (T) Asn (Lys) cpsf1 Pre-mRNAs processing.
14b 65,006,543 20.6 0.38/0.94 A (C) Asp (Glu) parp10 ADP-Ribosyltransferase.
21b 24,974,056 19.7 0.98/0.46 T (A) Met (Lys) rnaseh2b Non catalytic subunit of RNase H2.
25 a 47,105,598 26.0 0.84/0.03 A (G) Thr (Ala) mx1-1 Interferon-induced antiviral.
25 47,108,912 27.2 0.91/0.00 G (A) Val (Ile) mx1-1 Same as above.
25 47,111,137 18.0 0.79/0.06 G (A) Val (Met) mx1-1 Same as above.
25 a 47,120,121 33.1 0.83/0.06 C (T) Arg (Cys) mx1-1 Same as above.
25 47,147,348 27.2 0.22/0.98 G (T) Pro (His) mx1-2 Same as above.
25 47,181,001 25.4 0.85/0.00 T (C) His (Arg) mx2-1 Same as above.
  1. aAllele frequencies from genotyping are illustrated in Fig. 4
  2. bAllele frequencies from genotyping are illustrated in Additional file 1: Figure S5