Table 2 Missense mutations in selective sweeps. Several missense mutations were discovered in the selective sweeps. The table lists resequencing derived reference alleles frequencies in the northern (N) and southern (S) populations of salmon in Norway. SNPs from Chr 5 and Chr 25 selected for genotyping are shown in bold
Chr | Position | -log10P | Reference allele frequency (S/N) | Ref/alt nucleotide | Ref/alt amino acid | Gene | Description of gene |
|---|---|---|---|---|---|---|---|
5 a | 22,641,277 | 29.6 | 1.00/0.34 | A (G) | Phe (Ser) | nkrf | NF-kB repressing factor. |
5 | 22,691,092 | 27.5 | 0.95/0.29 | G (T) | Ala (Ser) | sowahc | Unknown function. |
5 a | 22,708,279 | 28.8 | 1.00/0.33 | C (T) | Val (Met) | nkap | NF-kB activating protein. |
5 a | 22,719,453 | 19.4 | 0.79/0.27 | T (A) | Val (Glu) | zbtb33 | Transcriptional regulator. |
10b | 76,272,006 | 18.7 | 0.94/0.46 | T (G) | Asp (Glu) | anln | Actin binding protein. |
10 | 76,272,245 | 18.4 | 0.96/0.49 | C (A) | Pro (Gln) | anln | Same as above. |
10 | 76,278,414 | 14.5 | 0.32/0.76 | G (A) | Ala (Thr) | anln | Same as above. |
13 | 78,341,469 | 24.1 | 0.97/0.43 | G (A) | Gly (Arg) | trpc2 | Transient Receptor Cation Channel. |
13 | 78,349,376 | 20.3 | 0.98/0.40 | T (G) | Glu (Ala) | rrm1 | Ribonucleoside-diphosphate reductase. |
13b | 78,413,379 | 20.7 | 0.98/0.48 | A (T) | Gln (Leu) | rb1 | Regulator of entry into cell division. |
14 | 64,739,123 | 20.0 | 0.55/0.01 | T (C) | Asn (Ile) | adnp2 | Transcription factor. |
14b | 64,988,859 | 11.9 | 0.36/0.79 | A (T) | Asn (Lys) | cpsf1 | Pre-mRNAs processing. |
14b | 65,006,543 | 20.6 | 0.38/0.94 | A (C) | Asp (Glu) | parp10 | ADP-Ribosyltransferase. |
21b | 24,974,056 | 19.7 | 0.98/0.46 | T (A) | Met (Lys) | rnaseh2b | Non catalytic subunit of RNase H2. |
25 a | 47,105,598 | 26.0 | 0.84/0.03 | A (G) | Thr (Ala) | mx1-1 | Interferon-induced antiviral. |
25 | 47,108,912 | 27.2 | 0.91/0.00 | G (A) | Val (Ile) | mx1-1 | Same as above. |
25 | 47,111,137 | 18.0 | 0.79/0.06 | G (A) | Val (Met) | mx1-1 | Same as above. |
25 a | 47,120,121 | 33.1 | 0.83/0.06 | C (T) | Arg (Cys) | mx1-1 | Same as above. |
25 | 47,147,348 | 27.2 | 0.22/0.98 | G (T) | Pro (His) | mx1-2 | Same as above. |
25 | 47,181,001 | 25.4 | 0.85/0.00 | T (C) | His (Arg) | mx2-1 | Same as above. |