Skip to main content

Table 1 The distribution of different nucleotide repeats in watermelon genome

From: Genome wide characterization of simple sequence repeats in watermelon genome and their application in comparative mapping and genetic diversity analysis

Nucleotide Number of loci identified Frequency (%) Mean repeat number Number of loci primer designed Percentage SSRs suitable for primer design (%)
Di 13474 34.09 12.29 11353 84.26
Tri 8947 22.64 10.56 7718 86.26
Tetra 5465 13.83 5.72 4552 83.29
Penta 4205 10.64 4.43 3681 87.54
Hexa 2082 5.28 4.43 1938 93.08
Hepta 4059 10.27 3.19 3412 84.06
Octo 1291 3.27 3.14 1156 89.54
Total 39523 100   33810 85.55