Levi A, Thomas C, Keinath A, Wehner T. Genetic diversity among watermelon (Citrullus lanatus and Citrullus colocynthis) accessions. Genet Resour Crop Evol. 2001;48(6):559–66.
Article
Google Scholar
Jarret RL, Merrick LC, Holms T, Evans J, Aradhya MK. Simple sequence repeats in watermelon (Citrullus lanatus (Thunb.) Matsum. & Nakai). Genome. 1997;40(4):433–41.
Article
CAS
PubMed
Google Scholar
Paris HS. Origin and emergence of the sweet dessert watermelon. Citrullus Lanatus Ann Bot-London. 2015;116(2):133–48.
Article
Google Scholar
Chomicki G, Renner SS. Watermelon origin solved with molecular phylogenetics including Linnaean material: another example of museomics. New Phytol. 2015;205(2):526–32.
Article
PubMed
Google Scholar
Zamir D, Navot N, Rudich J. Enzyme polymorphism in Citrullus lanatus and C. colocynthis in Israel and Sinai. Plant Syst Evol. 1984;146(3–4):163–70.
Article
CAS
Google Scholar
Levi A, Thies JA, Wechter WP, Harrison HF, Simmons AM, Reddy UK, Nimmakayala P, Fei ZJ. High frequency oligonucleotides: targeting active gene (HFO-TAG) markers revealed wide genetic diversity among Citrullus spp. accessions useful for enhancing disease or pest resistance in watermelon cultivars. Genet Resour Crop Evol. 2013;60(2):427–40.
Article
CAS
Google Scholar
Guo S, Zhang J, Sun H, Salse J, Lucas WJ, Zhang H, Zheng Y, Mao L, Ren Y, Wang Z, et al. The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions. Nat Genet. 2013;45(1):51–8.
Article
CAS
PubMed
Google Scholar
Ren Y, Zhao H, Kou Q, Jiang J, Guo S, Zhang H, Hou W, Zou X, Sun H, Gong G, et al. A high resolution genetic map anchoring scaffolds of the sequenced watermelon genome. PLoS One. 2012;7(1):e29453.
Article
CAS
PubMed
PubMed Central
Google Scholar
Reddy UK, Abburi L, Abburi VL, Saminathan T, Cantrell R, Vajja VG, Reddy R, Tomason YR, Levi A, Wehner TC, et al. A genome-wide scan of selective sweeps and association mapping of fruit traits using microsatellite markers in watermelon. J Hered. 2015;106(2):166–76.
Article
PubMed
Google Scholar
Lambel S, Lanini B, Vivoda E, Fauve J, Patrick Wechter W, Harris-Shultz KR, Massey L, Levi A. A major QTL associated with Fusarium oxysporum race 1 resistance identified in genetic populations derived from closely related watermelon lines using selective genotyping and genotyping-by-sequencing for SNP discovery. Theor Appl Genet. 2014;127(10):2105–15.
Article
CAS
PubMed
Google Scholar
Ren Y, Jiao D, Gong GY, Zhang HY, Guo SG, Zhang J, Xu Y. Genetic analysis and chromosome mapping of resistance to Fusarium oxysporum f. sp niveum (FON) race 1 and race 2 in watermelon (Citrullus lanatus L.). Mol Breeding. 2015;35:183.
Yang L, Koo DH, Li D, Zhang T, Jiang J, Luan F, Renner SS, Henaff E, Sanseverino W, Garcia-Mas J, et al. Next-generation sequencing, FISH mapping and synteny-based modeling reveal mechanisms of decreasing dysploidy in Cucumis. Plant J. 2014;77(1):16–30.
Article
CAS
PubMed
Google Scholar
Bruford MW, Wayne RK. Microsatellites and their application to population genetic studies. Curr Opin Genet Dev. 1993;3(6):939–43.
Article
CAS
PubMed
Google Scholar
Bo K, Ma Z, Chen J, Weng Y. Molecular mapping reveals structural rearrangements and quantitative trait loci underlying traits with local adaptation in semi-wild Xishuangbanna cucumber (Cucumis sativus L. var. xishuangbannanesis Qi et Yuan). Theor Appl Genet. 2015;128(1):25–39.
Article
CAS
PubMed
Google Scholar
Li Y, Wen C, Weng Y. Fine mapping of the pleiotropic locus B for black spine and orange mature fruit color in cucumber identifies a 50 kb region containing a R2R3-MYB transcription factor. Theor Appl Genet. 2013;126(8):2187–96.
Article
CAS
PubMed
Google Scholar
Lv J, Qi J, Shi Q, Shen D, Zhang S, Shao G, Li H, Sun Z, Weng Y, Shang Y, et al. Genetic diversity and population structure of cucumber (Cucumis sativus L. PLoS One. 2012;7(10):e46919.
Article
CAS
PubMed
PubMed Central
Google Scholar
Garke C, Ytournel F, Bed’hom B, Gut I, Lathrop M, Weigend S, Simianer H. Comparison of SNPs and microsatellites for assessing the genetic structure of chicken populations. Anim Genet. 2012;43(4):419–28.
Article
CAS
PubMed
Google Scholar
Hamblin MT, Warburton ML, Buckler ES. Empirical comparison of Simple Sequence Repeats and single nucleotide polymorphisms in assessment of maize diversity and relatedness. PLoS One. 2007;2(12):e1367.
Article
PubMed
PubMed Central
Google Scholar
Huang D, Zhang Y, Jin M, Li H, Song Z, Wang Y, Chen J. Characterization and high cross-species transferability of microsatellite markers from the floral transcriptome of Aspidistra saxicola (Asparagaceae). Mol Ecol Resour. 2014;14(3):569–77.
Article
CAS
PubMed
Google Scholar
Singh RK, Jena SN, Khan S, Yadav S, Banarjee N, Raghuvanshi S, Bhardwaj V, Dattamajumder SK, Kapur R, Solomon S, et al. Development, cross-species/genera transferability of novel EST-SSR markers and their utility in revealing population structure and genetic diversity in sugarcane. Gene. 2013;524(2):309–29.
Article
CAS
PubMed
Google Scholar
Cota LG, Moreira PA, Menezes EV, Gomes AS, Ericsson AR, Oliveira DA, Melo Jr AF. Transferability and characterization of simple sequence repeat markers from Anacardium occidentale to A. humile (Anacardiaceae). Genet Mol Res. 2012;11(4):4609–16.
Article
CAS
PubMed
Google Scholar
Wang YW, Samuels TD, Wu YQ. Development of 1,030 genomic SSR markers in switchgrass. Theor Appl Genet. 2011;122(4):677–86.
Article
CAS
PubMed
Google Scholar
Cavagnaro PF, Senalik DA, Yang L, Simon PW, Harkins TT, Kodira CD, Huang S, Weng Y. Genome-wide characterization of simple sequence repeats in cucumber (Cucumis sativus L.). BMC Genomics. 2010;11:569.
Article
PubMed
PubMed Central
Google Scholar
Zhang S, Tang CJ, Zhao Q, Li J, Yang LF, Qie LF, Fan XK, Li L, Zhang N, Zhao MC, et al. Development of highly polymorphic simple sequence repeat markers using genome-wide microsatellite variant analysis in Foxtail millet [Setaria italica (L.) P. Beauv.]. BMC Genomics. 2014;15:78.
Shi J, Huang S, Zhan J, Yu J, Wang X, Hua W, Liu S, Liu G, Wang H. Genome-wide microsatellite characterization and marker development in the sequenced Brassica crop species. DNA Res. 2014;21(1):53–68.
Article
CAS
PubMed
Google Scholar
Sarika, Arora V, Iquebal MA, Rai A, Kumar D. In silico mining of putative microsatellite markers from whole genome sequence of water buffalo (Bubalus bubalis) and development of first BuffSatDB. BMC Genomics. 2013;14:43.
Yang L, Koo D-H, Li Y, Zhang X, Luan F, Havey MJ, Jiang J, Weng Y. Chromosome rearrangements during domestication of cucumber as revealed by high-density genetic mapping and draft genome assembly. Plant J. 2012;71(6):895–906.
Article
CAS
PubMed
Google Scholar
Zhang HY, Wang H, Guo SG, Ren Y, Gong GY, Weng YQ, Xu Y. Identification and validation of a core set of microsatellite markers for genetic diversity analysis in watermelon, Citrullus lanatus Thunb. Matsum Nakai Euphytica. 2012;186(2):329–42.
Article
CAS
Google Scholar
Huang S, Li R, Zhang Z, Li L, Gu X, Fan W, Lucas WJ, Wang X, Xie B, Ni P, et al. The genome of the cucumber, Cucumis sativus L. Nat Genet. 2009;41(12):1275–81.
Article
CAS
PubMed
Google Scholar
Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, et al. The genome of melon (Cucumis melo L.). Proc Natl Acad Sci U S A. 2012;109(29):11872–7.
Article
CAS
PubMed
PubMed Central
Google Scholar
Li DW, Cuevas HE, Yang LM, Li YH, Garcia-Mas J, Zalapa J, Staub JE, Luan FS, Reddy U, He XM, et al. Syntenic relationships between cucumber (Cucumis sativus L.) and melon (C. melo L.) chromosomes as revealed by comparative genetic mapping. BMC Genomics. 2011;12:396.
Schaefer H, Heibl C, Renner SS. Gourds afloat: a dated phylogeny reveals an Asian origin of the gourd family (Cucurbitaceae) and numerous oversea dispersal events. Proc Biological Sci Royal Soc. 2009;276(1658):843–51.
Article
Google Scholar
Ghebretinsae AG, Thulin M, Barber JC. Relationships of cucumbers and melons unraveled: Molecular phylogenetics of Cucumis and related genera (Benincaseae, Cucurbitaceae). Am J Bot. 2007;94(7):1256–66.
Article
CAS
PubMed
Google Scholar
Lu C, Zou C, Zhang Y, Yu D, Cheng H, Jiang P, Yang W, Wang Q, Feng X, Prosper MA, et al. Development of chromosome-specific markers with high polymorphism for allotetraploid cotton based on genome-wide characterization of simple sequence repeats in diploid cottons (Gossypium arboreum L. and Gossypium raimondii Ulbrich). BMC Genomics. 2015;16:55.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wang Q, Fang L, Chen J, Hu Y, Si Z, Wang S, Chang L, Guo W, Zhang T. Genome-wide mining, characterization, and development of microsatellite markers in gossypium species. Sci Rep. 2015;5:10638.
Article
CAS
PubMed
PubMed Central
Google Scholar
Sonah H, Deshmukh RK, Sharma A, Singh VP, Gupta DK, Gacche RN, Rana JC, Singh NK, Sharma TR. Genome-wide distribution and organization of microsatellites in plants: an insight into marker development in Brachypodium. PLoS One. 2011;6(6):e21298.
Article
CAS
PubMed
PubMed Central
Google Scholar
Huo N, Lazo GR, Vogel JP, You FM, Ma Y, Hayden DM, Coleman-Derr D, Hill TA, Dvorak J, Anderson OD, et al. The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences. Funct Integr Genomics. 2008;8(2):135–47.
Article
CAS
PubMed
Google Scholar
Weber JL. Informativeness of human (dC-dA)n. (dG-dT)n polymorphisms. Genomics. 1990;7(4):524–30.
Article
CAS
PubMed
Google Scholar
Wang Z, Weber JL, Zhong G, Tanksley SD. Survey of plant short tandem DNA repeats. Theor Appl Genet. 1994;88(1):1–6.
Article
CAS
PubMed
Google Scholar
Tangphatsornruang S, Somta P, Uthaipaisanwong P, Chanprasert J, Sangsrakru D, Seehalak W, Sommanas W, Tragoonrung S, Srinives P. Characterization of microsatellites and gene contents from genome shotgun sequences of mungbean (Vigna radiata (L.) Wilczek). BMC Plant Biol. 2009;9:137.
Article
PubMed
PubMed Central
Google Scholar
Morgante M, Hanafey M, Powell W. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat Genet. 2002;30(2):194–200.
Article
CAS
PubMed
Google Scholar
Kumari K, Muthamilarasan M, Misra G, Gupta S, Subramanian A, Parida SK, Chattopadhyay D, Prasad M. Development of eSSR-Markers in and Their Applicability in Studying Genetic Diversity, Cross-Transferability and Comparative Mapping in Millet and Non-Millet Species. PLoS One. 2013;8(6):e67742.
Article
CAS
PubMed
PubMed Central
Google Scholar
Mathithumilan B, Kadam NN, Biradar J, Reddy SH, Ankaiah M, Narayanan MJ, Makarla U, Khurana P, Sreeman SM. Development and characterization of microsatellite markers for Morus spp. and assessment of their transferability to other closely related species. BMC Plant Biol. 2013;13:194.
Article
PubMed
PubMed Central
Google Scholar
Lim GA, Jewell EG, Li X, Erwin TA, Love C, Batley J, Spangenberg G, Edwards D. A comparative map viewer integrating genetic maps for Brassica and Arabidopsis. BMC Plant Biol. 2007;7:40.
Article
PubMed
PubMed Central
Google Scholar
Kamm A, Galasso I, Schmidt T, Heslop-Harrison JS. Analysis of a repetitive DNA family from Arabidopsis arenosa and relationships between Arabidopsis species. Plant Mol Biol. 1995;27(5):853–62.
Article
CAS
PubMed
Google Scholar
Jung S, Cestaro A, Troggio M, Main D, Zheng P, Cho I, Folta KM, Sosinski B, Abbott A, Celton JM, et al. Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies. BMC Genomics. 2012;13:129.
Article
CAS
PubMed
PubMed Central
Google Scholar
Doganlar S, Frary A, Daunay MC, Lester RN, Tanksley SD. A comparative genetic linkage map of eggplant (Solanum melongena) and its implications for genome evolution in the solanaceae. Genetics. 2002;161(4):1697–711.
CAS
PubMed
PubMed Central
Google Scholar
Luo MC, Deal KR, Akhunov ED, Akhunova AR, Anderson OD, Anderson JA, Blake N, Clegg MT, Coleman-Derr D, Conley EJ, et al. Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae. Proc Natl Acad Sci U S A. 2009;106(37):15780–5.
Article
CAS
PubMed
PubMed Central
Google Scholar
Solmaz I, Sari N, Aka-Kacar Y, Yalcin-Mendi NY. The genetic characterization of Turkish watermelon (Citrullus lanatus) accessions using RAPD markers. Genet Resour Crop Evol. 2010;57(5):763–71.
Article
CAS
Google Scholar
Hashizume T, Shimamoto I, Hirai M. Construction of a linkage map and QTL analysis of horticultural traits for watermelon [Citrullus lanatus (THUNB.) MATSUM & NAKAI] using RAPD, RFLP and ISSR markers. Theor Appl Genet. 2003;106(5):779–85.
CAS
PubMed
Google Scholar
Thies JA, Ariss JJ, Hassell RL, Olson S, Kousik CS, Levi A. Grafting for Management of Southern Root-Knot Nematode, Meloidogyne incognita, in Watermelon. Plant Dis. 2010;94(10):1195–9.
Article
Google Scholar
Sowell Jr G, Rhodes BB, Norton JD. New sources of resistance to watermelon anthracnose. J Amer Soc Hort Sci. 1980;105:197–9.
Google Scholar
Netzer D, Martyn RD. PI 296341, a source of resistance in watermelon to race 2 of Fusarium oxysporum f.sp. niveum. Plant Dis. 1989;73:518.
Article
Google Scholar
Kousik CS, Ikerd JL, Wechter P, Harrison H, Levi A. Resistance to Phytophthora Fruit Rot of Watermelon Caused by Phytophthora capsici in U.S. Plant Introductions. HortSci. 2012;47(12):1682–9.
Google Scholar
Murray MG, Thompson WF. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 1980;8(19):4321–5.
Article
CAS
PubMed
PubMed Central
Google Scholar
Thiel T, Michalek W, Varshney RK, Graner A. Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet. 2003;106(3):411–22.
CAS
PubMed
Google Scholar
Rozen S, Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol. 2000;132:365–86.
CAS
PubMed
Google Scholar
Krzywinski M, Schein J, Birol İ, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA. Circos: An information aesthetic for comparative genomics. Genome Res. 2009;19(9):1639–45.
Article
CAS
PubMed
PubMed Central
Google Scholar
Peakall R, Smouse PE. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update. Bioinformatics. 2012;28(19):2537–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol. 2011;28(10):2731–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000;155(2):945–59.
CAS
PubMed
PubMed Central
Google Scholar
Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 2005;14(8):2611–20.
Article
CAS
PubMed
Google Scholar
Koo DH, Nam YW, Choi D, Bang JW, de Jong H, Hur Y. Molecular cytogenetic mapping of Cucumis sativus and C. melo using highly repetitive DNA sequences. Chromosome Res. 2010;18(3):325–36.
Article
CAS
PubMed
Google Scholar