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Table 3 Significant marker-trait associations with identified genomic regions and chromosome location for each inoculated trait and model

From: Genome-wide association mapping of partial resistance to Phytophthora sojae in soybean plant introductions from the Republic of Korea

Trait Marker Chr.a Chr. position (bpb) QTL Minor allele frequency Additive effect PVEc p-value
Inoculated Root Rot Score ss715585712 3 3852888 3-1 0.18 0.096 3.162 9.14E-08
ss715585728 3 3865730 3-1 0.18 0.0967 3.212 7.26E-08
ss715586320 3 4276534 3-2 0.21 0.0922 3.018 1.77E-07
ss715586321 3 4277380 3-2 0.21 0.0936 3.133 1.04E-07
ss715586376 3 4315512 3-3 0.2 0.1039 3.895 3.27E-09
Inoculated Root weight ss715615031 13 30766058 13-1 0.42 −0.0695 2.468 1.44E-06
Inoculated Root Rot Score ss715635897 19 49121258 19-1 0.01 −0.4622 2.513 1.82E-06
ss715635934 19 49461582 19-2 0.01 −0.4622 2.513 1.82E-06
ss715636056 19 50544363 19-3 0.01 −0.4622 2.513 1.82E-06
ss715636059 19 50555433 19-3 0.01 −0.4622 2.513 1.82E-06
ss715636064 19 50604933 19-3 0.01 −0.4622 2.513 1.82E-06
ss715636073 19 50663466 19-3 0.01 −0.4622 2.513 1.82E-06
ss715636076 19 50666563 19-3 0.01 −0.4622 2.513 1.82E-06
ss715636077 19 50668662 19-3 0.01 −0.4622 2.513 1.82E-06
ss715636083 19 50679714 19-3 0.01 −0.4622 2.513 1.82E-06
ss715636084 19 50681263 19-3 0.01 −0.4622 2.513 1.82E-06
  1. a Chr chromosome
  2. b bp basepair position in the Glyma.Wm82.a2 assembly
  3. c PVE percent variance explained