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Table 1 Blast results to identify ASGV-associated contigs from ASGV-infected apple mRNA-Seq data

From: Integrated analyses using RNA-Seq data reveal viral genomes, single nucleotide variations, the phylogenetic relationship, and recombination for Apple stem grooving virus

Query id Subject ids Identity (%) Alignment length Mismatches Gap opens Query start Query end Subject start Subject end Evalue Bit score
TR9237 NC_001749.2 83.29 1532 253 3 3 1533 12 1541 0 1408
TR10325 NC_001749.2 97.15 492 14 0 1 492 515 24 0 832
TR12482 NC_001749.2 98.1 473 9 0 1 473 945 473 0 824
TR1643| NC_001749.2 97.71 1356 31 0 1 1356 1111 2466 0 2333
TR3149 NC_001749.2 98.28 232 4 0 1 232 1157 926 9.00E-113 407
TR1643 NC_001749.2 98.3 766 13 0 1 766 1701 2466 0 1343
TR9237 NC_001749.2 83.74 4705 741 23 1743 6435 1752 6444 0 4429
TR408 NC_001749.2 97.26 2225 61 0 1 2225 2440 4664 0 3771
TR8087 NC_001749.2 78.45 2237 452 30 1 2222 4660 2439 0 1434
TR2 NC_001749.2 83.26 723 119 2 1 722 5349 4628 0 664
TR9341 NC_001749.2 85.78 232 33 0 1 232 5389 5620 2.00E-64 246
TR5938 NC_001749.2 98.29 234 4 0 1 234 5647 5880 7.00E-114 411
TR12218 NC_001749.2 97.46 1065 27 0 1 1065 5683 4619 0 1818
TR9237 NC_001749.2 95.6 432 19 0 1 432 6013 6444 0 693
  1. The MEGABLAST results with the best hits were listed. Subject IDs indicates the identity number of an individual assembled contig. Subject ids indicate the best matched viral genome
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BMC Genomics

ISSN: 1471-2164

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