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Table 3 Comparison of de novo transcriptome assemblers for assembly of viral contigs

From: Integrated analyses using RNA-Seq data reveal viral genomes, single nucleotide variations, the phylogenetic relationship, and recombination for Apple stem grooving virus

  Trinity (SRR1089477) Velvet (SRR1089477) Trinity (SRR1269627) Velvet (SRR1269627)
No. of total contigs 33858 195149 15592 371745
No. of viral contigs 14 57 9 37
% of viral contigs 0.04 0.03 0.06 0.01
  1. SRR1089477 and SRR1269627 were data derived from pear and apple samples, respectively