Integrated analyses using RNA-Seq data reveal viral genomes, single nucleotide variations, the phylogenetic relationship, and recombination for Apple stem grooving virus

Table 3 Comparison of de novo transcriptome assemblers for assembly of viral contigs

	Trinity (SRR1089477)	Velvet (SRR1089477)	Trinity (SRR1269627)	Velvet (SRR1269627)
No. of total contigs	33858	195149	15592	371745
No. of viral contigs	14	57	9	37
% of viral contigs	0.04	0.03	0.06	0.01

SRR1089477 and SRR1269627 were data derived from pear and apple samples, respectively

ISSN: 1471-2164