| In alignment | In recombinant sequence | Relative to CTLV_Lily |  |  |  | Detection methods | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Event Number | Begin | End | Begin | End | Begin | End | Recombinant sequence(s) | Minor parental sequence(s) | Major parental sequence(s) | RDP | GENECONV | Bootscan | Maxchi | Chimaera | SiSscan | PhylPro | LARD | 3Seq |
1 | 6492 | 1926 | 6487 | 1924 | 6488 | 1925 | ASGV_YTG | Unknown (ASGV_HH), Unknown (ASGV_CHN) | ASGV_Fuji | 1.30E-31 | 3.39E-09 | 8.78E-30 | 1.16E-10 | 9.12E-16 | 9.16E-27 | NS | NS | 3.17E-17 |
2 | 6492 | 2488 | 6488 | 2487 | 6488 | 2487 | ASGV_HH, ASGV_CHN, CTLV_MTH[P] | ASGV_Fuji, CTLV_MTH | ASGV_Li-23, CTLV_Lily | 3.40E-19 | 3.89E-04 | 1.47E-16 | 1.29E-16 | 1.83E-10 | 1.06E-27 | NS | NS | 1.48E-13 |
3 | 4112 | 4552 | 4110 | 4550 | 4110 | 4550 | PBNLSV | ASGV_Li-23, CTLV_Lily | ASGV_KFP | 1.20E-12 | 2.22E-08 | 8.19E-11 | 2.20E-05 | 2.75E-05 | 1.41E-10 | NS | NS | NS |
4 | 5844 | 6224 | 5842 | 6221 | 5842 | 6221 | PBNLSV | ASGV_Li-23, CTLV_Lily | Unknown (CTLV_Pk), Unknown (CTLV_Kumquat1), Unknown (CTLV_LCd-NA-1), Unknown (CTLV_SO), Unknown (CTLV_XHC), Unknown (ASGV_Matsuco) | 6.90E-07 | 1.12E-08 | 1.61E-07 | 6.45E-04 | 6.44E-04 | 1.30E-06 | NS | NS | NS |
5 | 5819 | 6412a | 5816 | 6408a | 5817 | 6409a | ASGV_YTG | ASGV_HH, ASGV_CHN | ASGV_P-209, ASGV_T47 | 2.42E-08 | 2.14E-03 | 1.58E-09 | 2.89E-03 | 1.65E-02 | 1.97E-07 | NS | NS | NS |
6 | 4412 | 4946 | 4409 | 4943 | 4410 | 4944 | CTLV_LCd-NA-1 | CTLV_SO, CTLV_Kumquat1, CTLV_XHC | Unknown (ASGV_Matsuco) | 1.20E-02 | 2.91E-04 | 1.01E-02 | 4.02E-04 | 5.76E-03 | 4.04E-03 | NS | NS | NS |