Table 4 Transcriptional behavior of genes involved in the photoperiod pathway
Comparison | GeneID | log2 Ratio | Up-Down- Regulation | P-value | FDR | Gene description |
|---|---|---|---|---|---|---|
CK vs S1 | Unigene12136_All | 1.21 | Up | 5.50E-97 | 2.67E-94 | flavin-binding kelch repeat F-box 1 |
Unigene11703_All | 1.46 | Up | 8.34E-38 | 1.17E-35 | GIGANTEA | |
Unigene38196_All | 1.19 | Up | 2.73E-08 | 8.05E-07 | GIGANTEA | |
Unigene29301_All | 1.08 | Up | 1.98E-20 | 1.44E-18 | GIGANTEA | |
Unigene11436_All | 1.78 | Up | 2.30E-57 | 5.49E-55 | zinc finger protein CONSTANS 5 | |
CL7046.Contig5_All | 1.12 | Up | 1.58E-46 | 2.91E-44 | zinc finger protein CONSTANS 9 | |
CL12137.Contig2_All | 1.48 | Up | 1.08E-61 | 2.80E-59 | pseudo-response regulator 5 | |
Unigene34062_All | 1.10 | Up | 8.97E-41 | 1.37E-38 | zinc finger protein CONSTANS 16 | |
Unigene14733_All | −2.17 | Down | 4.23E-35 | 5.41E-33 | Zinc finger protein CONSTANS-LIKE 10 | |
CK vs S2 | Unigene11703_All | 1.48 | Up | 2.94E-39 | 3.48E-37 | GIGANTEA |
Unigene23078_All | 1.11 | Up | 4.36E-06 | 7.41E-05 | Protein EARLY FLOWERING 4 | |
Unigene2193_All | −1.71 | Down | 7.63E-07 | 1.48E-05 | Probable lysine-specific demethylase ELF6 | |
Unigene11436_All | 1.16 | Up | 1.11E-20 | 6.34E-19 | zinc finger protein CONSTANS 5 | |
Unigene34062_All | 1.31 | Up | 5.11E-61 | 9.87E-59 | zinc finger protein CONSTANS 16 | |
Unigene14733_All | −1.68 | Down | 4.79E-25 | 3.36E-23 | Zinc finger protein CONSTANS-LIKE 10 | |
CL201.Contig1_All | −1.32 | Down | 1.30E-28 | 1.05E-26 | Zinc finger protein CONSTANS-LIKE 2 | |
CL14115.Contig7_All | −1.04 | Down | 1.79E-06 | 3.26E-05 | Probable salt tolerance-like protein | |
CL10227.Contig1_All | 1.23 | Up | 1.22E-05 | 0.000191338 | Transcription factor PIF7 | |
CL1232.Contig1_All | 1.30 | Up | 3.41E-08 | 7.90E-07 | Transcription factor bHLH62,PIF | |
CL1232.Contig2_All | 1.55 | Up | 5.21E-09 | 1.32E-07 | Transcription factor bHLH62,PIF | |
Unigene39862_All | 1.19 | Up | 3.27E-09 | 8.51E-08 | Transcription factor bHLH78,PIF | |
CL7736.Contig2_All | 1.40 | Up | 3.12E-06 | 5.44E-05 | Transcription factor PIF1 | |
CL8412.Contig1_All | 1.35 | Up | 5.76E-06 | 9.59E-05 | Transcription factor bHLH63,PIF | |
CL8412.Contig2_All | 1.50 | Up | 1.34E-09 | 3.64E-08 | Transcription factor bHLH63,PIF | |
Unigene14185_All | 1.06 | Up | 2.50E-08 | 5.88E-07 | Transcription factor PIF1 | |
CL4715.Contig6_All | −1.72 | Down | 8.42E-06 | 0.000136083 | APRR1 | |
CL4737.Contig2_All | 1.16 | Up | 1.01E-05 | 0.000161517 | APRR7 | |
CK vs L1 | Unigene12136_All | 1.31 | Up | 6.03E-113 | 8.00E-110 | flavin-binding kelch repeat F-box 1 |
CL9998.Contig1_All | 1.02 | Up | 5.31E-10 | 3.26E-08 | F-box/kelch-repeat protein | |
Unigene34044_All | 1.06 | Up | 6.04E-11 | 4.06E-09 | Protein LHY | |
CL12137.Contig2_All | 1.81 | Up | 1.46E-99 | 1.56E-96 | pseudo-response regulator 5 | |
CL7617.Contig1_All | 1.01 | Up | 5.73E-07 | 2.43E-05 | PRR73 | |
Unigene11703_All | 1.41 | Up | 3.63E-34 | 8.32E-32 | GIGANTEA | |
Unigene38196_All | 1.85 | Up | 1.41E-21 | 1.84E-19 | GIGANTEA | |
Unigene18727_All | 1.65 | Up | 1.60E-07 | 7.41E-06 | GIGANTEA | |
Unigene29301_All | 1.20 | Up | 1.08E-24 | 1.65E-22 | GIGANTEA | |
Unigene34062_All | 1.17 | Up | 1.36E-45 | 4.43E-43 | zinc finger protein CONSTANS 16 | |
Unigene11436_All | 1.47 | Up | 3.50E-35 | 8.41E-33 | zinc finger protein CONSTANS 5 | |
Unigene11502_All | 1.57 | Up | 1.01E-12 | 7.86E-11 | Zinc finger protein CONSTANS-LIKE 2 | |
Unigene14733_All | −1.28 | Down | 8.98E-17 | 9.26E-15 | Zinc finger protein CONSTANS-LIKE 10 | |
CL11069.Contig1_All | −1.04 | Down | 7.89E-10 | 4.77E-08 | Transcription factor bHLH62,PIF | |
CL11069.Contig2_All | −1.17 | Down | 1.14E-14 | 1.04E-12 | Transcription factor bHLH62,PIF | |
CL8412.Contig2_All | 1.30 | Up | 5.19E-07 | 2.21E-05 | Transcription factor bHLH63,PIF | |
CK vs L2 | Unigene28531_All | 2.18 | Up | 4.84E-05 | 0.000783372 | Phytochrome B |
CL10227.Contig1_All | 1.83 | Up | 7.75E-13 | 3.45E-11 | Transcription factor PIF7 | |
CL11069.Contig1_All | −2.02 | Down | 4.86E-24 | 4.00E-22 | Transcription factor bHLH62,PIF | |
CL11069.Contig2_All | −1.56 | Down | 4.69E-22 | 3.53E-20 | Transcription factor bHLH62,PIF | |
CL11069.Contig3_All | −1.58 | Down | 1.31E-06 | 2.89E-05 | Transcription factor bHLH62,PIF3 | |
CL12137.Contig2_All | 1.26 | Up | 2.42E-41 | 3.61E-39 | pseudo-response regulator 5 | |
CL1232.Contig1_All | 1.58 | Up | 2.99E-12 | 1.27E-10 | Transcription factor bHLH62,PIF | |
CL1232.Contig2_All | 1.73 | Up | 2.63E-11 | 1.02E-09 | Transcription factor bHLH62,PIF | |
CL14115.Contig5_All | −1.03 | Down | 1.38E-10 | 5.04E-09 | Probable salt tolerance-like protein | |
CL201.Contig1_All | −1.26 | Down | 3.82E-26 | 3.44E-24 | Zinc finger protein CONSTANS-LIKE 2 | |
CL4737.Contig4_All | 1.12 | Up | 2.47E-05 | 0.000428188 | APRR7 | |
CL8412.Contig1_All | 1.34 | Up | 9.36E-06 | 0.000177607 | Transcription factor bHLH63,PIF | |
CL8412.Contig2_All | 1.63 | Up | 2.24E-11 | 8.79E-10 | Transcription factor bHLH63,PIF | |
CL8494.Contig3_All | −1.09 | Down | 3.65E-12 | 1.53E-10 | Transcription factor DIVARICATA, CCA1 | |
Unigene11436_All | 1.81 | Up | 2.61E-59 | 6.30E-57 | zinc finger protein CONSTANS 5 | |
Unigene11502_All | 1.32 | Up | 9.64E-09 | 2.87E-07 | Zinc finger protein CONSTANS-LIKE 2 | |
Unigene11703_All | 1.74 | Up | 4.52E-57 | 1.02E-54 | GIGANTEA | |
Unigene18727_All | 1.89 | Up | 3.19E-10 | 1.12E-08 | GIGANTEA | |
Unigene29301_All | 1.49 | Up | 1.18E-41 | 1.78E-39 | GIGANTEA | |
Unigene34062_All | 1.26 | Up | 2.52E-54 | 5.36E-52 | zinc finger protein CONSTANS 16 | |
Unigene38196_All | 2.10 | Up | 3.58E-30 | 3.77E-28 | GIGANTEA | |
Unigene39862_All | 1.48 | Up | 1.55E-14 | 7.80E-13 | Transcription factor bHLH78,PIF | |
CK vs L3 | CL10227.Contig1_All | 1.61 | Up | 1.65E-09 | 1.02E-07 | Transcription factor PIF7 |
CL11069.Contig1_All | −1.45 | Down | 1.45E-15 | 1.54E-13 | Transcription factor bHLH62,PIF | |
CL11069.Contig2_All | −1.08 | Down | 4.87E-13 | 4.30E-11 | Transcription factor bHLH62,PIF3 | |
CL11101.Contig1_All | 1.20 | Up | 1.10E-12 | 9.51E-11 | Zinc finger protein CONSTANS-LIKE 16 | |
CL1232.Contig1_All | 1.23 | Up | 3.29E-07 | 1.49E-05 | Transcription factor bHLH62,PIF | |
CL1232.Contig2_All | 1.24 | Up | 1.25E-05 | 0.000421053 | Transcription factor bHLH62,PIF | |
Unigene11436_All | 1.19 | Up | 1.81E-21 | 2.78E-19 | zinc finger protein CONSTANS 5 | |
Unigene11703_All | 1.52 | Up | 1.57E-40 | 4.91E-38 | GIGANTEA | |
Unigene18727_All | 1.83 | Up | 1.96E-09 | 1.20E-07 | GIGANTEA | |
Unigene19579_All | 1.38 | Up | 1.42E-08 | 7.80E-07 | APRR7 | |
Unigene29301_All | 1.29 | Up | 2.64E-29 | 5.83E-27 | GIGANTEA | |
Unigene38196_All | 1.94 | Up | 1.48E-24 | 2.66E-22 | GIGANTEA | |
Unigene39862_All | 1.35 | Up | 9.24E-12 | 7.35E-10 | Transcription factor bHLH78,PIF |