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Table 4 Transcriptional behavior of genes involved in the photoperiod pathway

From: Transcriptomic analysis of differentially expressed genes in the floral transition of the summer flowering chrysanthemum

Comparison GeneID log2 Ratio Up-Down-
Regulation
P-value FDR Gene description
CK vs S1 Unigene12136_All 1.21 Up 5.50E-97 2.67E-94 flavin-binding kelch repeat F-box 1
Unigene11703_All 1.46 Up 8.34E-38 1.17E-35 GIGANTEA
Unigene38196_All 1.19 Up 2.73E-08 8.05E-07 GIGANTEA
Unigene29301_All 1.08 Up 1.98E-20 1.44E-18 GIGANTEA
Unigene11436_All 1.78 Up 2.30E-57 5.49E-55 zinc finger protein CONSTANS 5
CL7046.Contig5_All 1.12 Up 1.58E-46 2.91E-44 zinc finger protein CONSTANS 9
CL12137.Contig2_All 1.48 Up 1.08E-61 2.80E-59 pseudo-response regulator 5
Unigene34062_All 1.10 Up 8.97E-41 1.37E-38 zinc finger protein CONSTANS 16
Unigene14733_All −2.17 Down 4.23E-35 5.41E-33 Zinc finger protein CONSTANS-LIKE 10
CK vs S2 Unigene11703_All 1.48 Up 2.94E-39 3.48E-37 GIGANTEA
Unigene23078_All 1.11 Up 4.36E-06 7.41E-05 Protein EARLY FLOWERING 4
Unigene2193_All −1.71 Down 7.63E-07 1.48E-05 Probable lysine-specific demethylase ELF6
Unigene11436_All 1.16 Up 1.11E-20 6.34E-19 zinc finger protein CONSTANS 5
Unigene34062_All 1.31 Up 5.11E-61 9.87E-59 zinc finger protein CONSTANS 16
Unigene14733_All −1.68 Down 4.79E-25 3.36E-23 Zinc finger protein CONSTANS-LIKE 10
CL201.Contig1_All −1.32 Down 1.30E-28 1.05E-26 Zinc finger protein CONSTANS-LIKE 2
CL14115.Contig7_All −1.04 Down 1.79E-06 3.26E-05 Probable salt tolerance-like protein
CL10227.Contig1_All 1.23 Up 1.22E-05 0.000191338 Transcription factor PIF7
CL1232.Contig1_All 1.30 Up 3.41E-08 7.90E-07 Transcription factor bHLH62,PIF
CL1232.Contig2_All 1.55 Up 5.21E-09 1.32E-07 Transcription factor bHLH62,PIF
Unigene39862_All 1.19 Up 3.27E-09 8.51E-08 Transcription factor bHLH78,PIF
CL7736.Contig2_All 1.40 Up 3.12E-06 5.44E-05 Transcription factor PIF1
CL8412.Contig1_All 1.35 Up 5.76E-06 9.59E-05 Transcription factor bHLH63,PIF
CL8412.Contig2_All 1.50 Up 1.34E-09 3.64E-08 Transcription factor bHLH63,PIF
Unigene14185_All 1.06 Up 2.50E-08 5.88E-07 Transcription factor PIF1
CL4715.Contig6_All −1.72 Down 8.42E-06 0.000136083 APRR1
CL4737.Contig2_All 1.16 Up 1.01E-05 0.000161517 APRR7
CK vs L1 Unigene12136_All 1.31 Up 6.03E-113 8.00E-110 flavin-binding kelch repeat F-box 1
CL9998.Contig1_All 1.02 Up 5.31E-10 3.26E-08 F-box/kelch-repeat protein
Unigene34044_All 1.06 Up 6.04E-11 4.06E-09 Protein LHY
CL12137.Contig2_All 1.81 Up 1.46E-99 1.56E-96 pseudo-response regulator 5
CL7617.Contig1_All 1.01 Up 5.73E-07 2.43E-05 PRR73
Unigene11703_All 1.41 Up 3.63E-34 8.32E-32 GIGANTEA
Unigene38196_All 1.85 Up 1.41E-21 1.84E-19 GIGANTEA
Unigene18727_All 1.65 Up 1.60E-07 7.41E-06 GIGANTEA
Unigene29301_All 1.20 Up 1.08E-24 1.65E-22 GIGANTEA
Unigene34062_All 1.17 Up 1.36E-45 4.43E-43 zinc finger protein CONSTANS 16
Unigene11436_All 1.47 Up 3.50E-35 8.41E-33 zinc finger protein CONSTANS 5
Unigene11502_All 1.57 Up 1.01E-12 7.86E-11 Zinc finger protein CONSTANS-LIKE 2
Unigene14733_All −1.28 Down 8.98E-17 9.26E-15 Zinc finger protein CONSTANS-LIKE 10
CL11069.Contig1_All −1.04 Down 7.89E-10 4.77E-08 Transcription factor bHLH62,PIF
CL11069.Contig2_All −1.17 Down 1.14E-14 1.04E-12 Transcription factor bHLH62,PIF
CL8412.Contig2_All 1.30 Up 5.19E-07 2.21E-05 Transcription factor bHLH63,PIF
CK vs L2 Unigene28531_All 2.18 Up 4.84E-05 0.000783372 Phytochrome B
CL10227.Contig1_All 1.83 Up 7.75E-13 3.45E-11 Transcription factor PIF7
CL11069.Contig1_All −2.02 Down 4.86E-24 4.00E-22 Transcription factor bHLH62,PIF
CL11069.Contig2_All −1.56 Down 4.69E-22 3.53E-20 Transcription factor bHLH62,PIF
CL11069.Contig3_All −1.58 Down 1.31E-06 2.89E-05 Transcription factor bHLH62,PIF3
CL12137.Contig2_All 1.26 Up 2.42E-41 3.61E-39 pseudo-response regulator 5
CL1232.Contig1_All 1.58 Up 2.99E-12 1.27E-10 Transcription factor bHLH62,PIF
CL1232.Contig2_All 1.73 Up 2.63E-11 1.02E-09 Transcription factor bHLH62,PIF
CL14115.Contig5_All −1.03 Down 1.38E-10 5.04E-09 Probable salt tolerance-like protein
CL201.Contig1_All −1.26 Down 3.82E-26 3.44E-24 Zinc finger protein CONSTANS-LIKE 2
CL4737.Contig4_All 1.12 Up 2.47E-05 0.000428188 APRR7
CL8412.Contig1_All 1.34 Up 9.36E-06 0.000177607 Transcription factor bHLH63,PIF
CL8412.Contig2_All 1.63 Up 2.24E-11 8.79E-10 Transcription factor bHLH63,PIF
CL8494.Contig3_All −1.09 Down 3.65E-12 1.53E-10 Transcription factor DIVARICATA, CCA1
Unigene11436_All 1.81 Up 2.61E-59 6.30E-57 zinc finger protein CONSTANS 5
Unigene11502_All 1.32 Up 9.64E-09 2.87E-07 Zinc finger protein CONSTANS-LIKE 2
Unigene11703_All 1.74 Up 4.52E-57 1.02E-54 GIGANTEA
Unigene18727_All 1.89 Up 3.19E-10 1.12E-08 GIGANTEA
Unigene29301_All 1.49 Up 1.18E-41 1.78E-39 GIGANTEA
Unigene34062_All 1.26 Up 2.52E-54 5.36E-52 zinc finger protein CONSTANS 16
Unigene38196_All 2.10 Up 3.58E-30 3.77E-28 GIGANTEA
Unigene39862_All 1.48 Up 1.55E-14 7.80E-13 Transcription factor bHLH78,PIF
CK vs L3 CL10227.Contig1_All 1.61 Up 1.65E-09 1.02E-07 Transcription factor PIF7
CL11069.Contig1_All −1.45 Down 1.45E-15 1.54E-13 Transcription factor bHLH62,PIF
CL11069.Contig2_All −1.08 Down 4.87E-13 4.30E-11 Transcription factor bHLH62,PIF3
CL11101.Contig1_All 1.20 Up 1.10E-12 9.51E-11 Zinc finger protein CONSTANS-LIKE 16
CL1232.Contig1_All 1.23 Up 3.29E-07 1.49E-05 Transcription factor bHLH62,PIF
CL1232.Contig2_All 1.24 Up 1.25E-05 0.000421053 Transcription factor bHLH62,PIF
Unigene11436_All 1.19 Up 1.81E-21 2.78E-19 zinc finger protein CONSTANS 5
Unigene11703_All 1.52 Up 1.57E-40 4.91E-38 GIGANTEA
Unigene18727_All 1.83 Up 1.96E-09 1.20E-07 GIGANTEA
Unigene19579_All 1.38 Up 1.42E-08 7.80E-07 APRR7
Unigene29301_All 1.29 Up 2.64E-29 5.83E-27 GIGANTEA
Unigene38196_All 1.94 Up 1.48E-24 2.66E-22 GIGANTEA
Unigene39862_All 1.35 Up 9.24E-12 7.35E-10 Transcription factor bHLH78,PIF