Gene expression profile indicates involvement of NO in Camellia sinensis pollen tube growth at low temperature

BMC Genomics

Table 1 Summary of the output in the transcriptomes of pollen tubes

Sample	Total raw reads	Total clean reads	Total clean nucleotides (nt)	Q20 percentage	N percentage	GC percentage
CsPT-CK-1	54,971,748	51,933,988	4,674,058,920	97.92 %	0.00 %	45.44 %
CsPT-CK-2	57,928,046	54,556,816	4,910,113,440	97.92 %	0.00 %	45.23 %
CsPT-CK-3	56,727,452	53,686,756	4,831,808,040	97.93 %	0.00 %	45.39 %
CsPT-LT-1	58,915,630	55,506,666	4,995,599,940	97.86 %	0.00 %	45.64 %
CsPT-LT-2	55,468,880	52,434,854	4,719,136,860	97.85 %	0.00 %	45.39 %
CsPT-LT-3	54,793,794	51,330,908	4,619,781,720	97.77 %	0.01 %	45.35 %
CsPT-NO-1	53,553,772	50,257,976	4,523,217,840	97.84 %	0.01 %	45.20 %
CsPT-NO-2	55,260,058	51,851,106	4,666,599,540	97.82 %	0.01 %	45.40 %
CsPT-NO-3	54,754,898	51,364,466	4,622,801,940	97.83 %	0.01 %	45.30 %

CK control, LT 4 °C treatment, NO NO donor DEANONOate treatment. All of the experiments were replicated three times. Q20 percentage shows the percentage of nucleotides with a quality value higher than 20; N percentage represents the percentage of unknown nucleotides in clean reads; and GC percentage indicates the percentage of guanidine and cytosine nucleotides among total nucleotides

ISSN: 1471-2164