Table 3 Examples of genomic co-localisation of in planta up-regulated differentially expressed Fom genes unique to DZA315 or A17 datasets. Full DEG lists are detailed in Additional files 2 and 3
Dataset | Gene IDs | Chrom./ scaffolda | Pfam domain / best BlastP match / other characteristics |
|---|---|---|---|
A17 2 dpi | Fom_11200, 11207, 11209, 11211 | core (scaffold_15; 1.38Â Mb) | GST, MFS transporter, FAD-binding, uncharacterised protein |
DZA315 7 dpi | Fom_01388, 01394, 01397 | core (scaffold_2; 3.35Â Mb) | glycoside hydrolase, fasciclin, MFS transporter |
| Â | Fom_01935, 01936, 01938 | core (scaffold_2; 3.35Â Mb) | arca-like protein, MFS transporter, glycoside hydrolase |
| Â | Fom_03730, 03733, 03734 | core (scaffold_4; 2.62Â Mb) | Hypothetical, MFS transporter, synthase |
| Â | Fom_15853, 15855, 15856, 15860 | core (scaffold_131; 0.03Â Mb) | FAD-binding protein, ADH, FAD-binding protein, p450 |
| Â | Fom_14230, 14231, 14232, 14241 | CDC (scaffold_31; 0.21Â Mb) | Oxidoreductase, MFS transporter, FAD-binding protein, oxidase |