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Table 1 Number of putative antimicrobial gene clusters identified in 328 Bacillales genomes (reported in Genbank)

From: Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

Class RPsa RPs RPs RPs RPs RPs RPs RPs RPs RPs RPs NRPs PKs
I I I I I I I I II III TOTAL
Genera Lanthipeptides type I Lanthipeptides type II Head to tail cyclized peptides Sacti-peptides Glyco-cins Lasso peptides LAPs Thio-peptides      
Bacillus subtilis (39) 6    53 15   1 1 8   84 168 66
Bacillus thuringiensis (46) 4 8 6 5 3 4 24   31 14 99 152  
Bacillus anthracis (39)        25     25 117  
Bacillus cereus (55) 1 16 11 4 1 9 34 3 22 4 105 144 1
Bacillus amyloliquefaciens (13)   16      1   12 1 30 59 48
Bacillus licheniformis (3)   1     3      4 6 3
Bacillus coagulans (5)    6        1 7   
Bacillus megaterium (5) 1      1      2 5 5
Bacillus pumilus (8)    8 2      14   24 17 8
Bacillus atrophaeus (4)     5    4     9 20 8
Bacillus weihenstephanensis (2)      1 1      2 8  
Bacillus mycoides (5) 2 4     5 5   4   20 14  
Bacillus cytotoxicus (1)        1     1   
Bacillus clausii (2) 1    2        3   2
Bacillus halodurans (1)   2         1 3   
Bacillus cellulosilyticus (1)              
Bacillus infantis (1)              
Bacillus selenitireducens (1)              
Bacillus methylotrophicus (15)   7      4   15   26 68 58
Bacillus paralicheniformis (3)   3 3    3      9 12 2
Bacillus methanolicus (1)        1     1   1
Bacillus endophyticus (1)   2     1 1     4 2 1
Bacillus smithii (1)     1        1   1
Bacillus pseudomycoides (1)   1     1 1   1   4 3  
Bacillus pseudofirmus (1)        1     1   
Bacillus bombysepticus (1)             4  
Bacillus lehensis (1)      1       1 4  
Bacillus toyonensis (1)       1 1   1   3 3  
Bacillus gobiensis (1)    1     1     2 2 1
Bacillus sp. (13) 3 1 3 5 1 1 2   6 2 24 36 24
Kyrpidia tusciae (1)    3         3   1
Alicyclobacillus acidocaldarius (2)              
Anoxybacillus flavithermus (1)          2   2   1
Geobacillus stearothermophilus (2)    1 1    1     3   2
Geobacillus thermodenitrificans (1) 1 1          2   1
Geobacilllus kaustophilus (1) 1   1         2   1
Geobacillus sp. (9)    5   1   2   1   9 3 6
Lysinibacillus sphaericus (1)         1    1 3 1
Lysinibacillus fusiformis (1)             1 1
Brevibacillus laterosporus (1)     1    1   1   3 5  
Brevibacillus brevis (1)        1   1   2 3 3
Paenibacillus polymyxa (7) 11 3     7      21 39 7
Paenibacillus larvae (1) 1   2 2      1 1 7 4  
Paenibacillus mucilaginosus (3)    2     3     5 10 4
Paenibacillus peoriae (1) 1      1      2 6  
Paenibacillus odorifer (1)     1        1 1  
Paenibacillus stellifer (1)       1      1 1  
Paenibacillus borealis (1)       1      1 1 2
Paenibacillus bovis (1)       1      1 4  
Paenibacillus naphthalenovorans (1)        1     1   1
Paenibacillus beijingensis (1)             1  
Paenibacillus graminis (1)     1        1 4  
Paenibacillus durus (2) 1 3     2    1   7 4 1
Paenibacillus terrae (1)       1      1 3  
Paenibacilllus riograndensis (1)     1        1 4  
Paenibacillus sabinae (1)       1      1 1  
Paenibacillus sp. (12)   3   3 1 3 1     11 22 6
Total 34 71 52 87 24 48 117 5 121 24 583 964 267
  1. Numbers in parentheses () indicate the number of genomes analyzed per genus
  2. aRPs is short for ribosomally synthesized peptides