Kopecký D, Studer B. Emerging technologies advancing forage and turf grass genomics. Biotechnol Adv. 2014;32:190–9.
Article
PubMed
Google Scholar
Levan A, Fredga K, Sandberg AA. Nomenclature for centromeric position on chromosomes. Hereditas. 1964;52:201–20.
Article
Google Scholar
Hsu T-C. Human and Mammalian Cytogenetics: An Historical Perspective. New York: Springer; 1979.
Book
Google Scholar
ISCN. An international system for human cytogenetic nomenclature: report of the Standing Committee on Human Cytogenetic Nomenclature. Harnden DG, Klinger HP, editors. Basel: Karger; 1985.
DiBerardino D, Hayes H, Fries R, Long S. International system for cytogenetic nomenclature of domestic animals. The Second International Conference on Standardization of Domestic Animal Karyotypes, INRA, Jouy-en Josas, France, 22nd-26th May, 1989. Cytogenet Cell Genet. 1990;53:65–79.
Article
Google Scholar
Ansari HA, Bosma AA, Broad TE, Bunch TD, Long SE, Maher DW, Pearce PD, Popescu CP. Standard G-, Q-, and R-banded ideograms of the domestic sheep (Ovis aries): homology with cattle (Bos taurus). Report of the Committee for the Standardization of the Sheep Karyotype. Cytogenet Cell Genet. 1999;87:134–42.
Article
CAS
PubMed
Google Scholar
Świtoński M, Reimann N, Bosma AA, Long S, Bartnitzke S, Pieńkowska A, Moreno-Milan MM, Fischer P. Report on the progress of standardization of the G-banded canine (Canis familiaris) karyotype. Chromosome Res. 1996;4:306–9.
Article
PubMed
Google Scholar
Breen M, Bullerdiek J, Langford CF. The DAPI banded karyotype of the domestic dog (Canis familiaris) generated using chromosome-specific paint probes. Chromosome Res. 1999;7:401–6.
Article
CAS
PubMed
Google Scholar
Griesbach RJ. The use of confocal microscopy to study chromosome banding in Ornithogalum. J Hered. 1998;89:184–8.
Article
Google Scholar
Murata M, Orton TJ. G-band-like differentiation in mitotic prometaphase chromosomes of celery. J Hered. 1984;75:225–8.
Google Scholar
Muravenko OV, Amosova AV, Samatadze TE, Popov KV, Poletaev AI, Zelenin AV. 9-Aminoacridine: an efficient reagent to improve human and plant chromosome banding patterns and to standardize chromosome image analysis. Cytometry Part A. 2003;51:52–7.
Article
Google Scholar
Song YC, Liu LH, Ding Y, Tian XB, Yao Q, Meng L, He CR, Xu MS. Comparisons of G-banding patterns in six species of the Poaceae. Hereditas. 1994;121:31–8.
Article
Google Scholar
Chen R, Song W, Li X, An Z. Chromosome G-banding in plants by inducing with trypsin and urea. Cell Res. 1994;4:79–87.
Article
CAS
Google Scholar
Greilhuber J. Why plant chromosomes do not show G-bands. Theor Appl Genet. 1977;50:121–4.
CAS
PubMed
Google Scholar
Liu J, She C, Hu Z, Xiong Z, Liu L, Song Y. A new chromosome fluorescence banding technique combining DAPI staining with image analysis in plants. Chromosoma. 2004;113:16–21.
Article
CAS
PubMed
Google Scholar
Humphreys M, Feuerstein U, Vanderwalle M, Baert J. Ryegrasses. In: Boller B, Posselt UK, Veronesi F, editors. Fodder crops and amenity grasses: handbook of plant breeding. New York: Springer; 2010. p. 221–60.
Google Scholar
Williams WM, Easton HS, Jones CS. Future options and targets for pasture plant breeding in New Zealand. N Z J Agric Res. 2007;50:223–48.
Article
Google Scholar
Kopecký D, Havránková M, Loureiro J, Castro S, Lukaszewski AJ, Bartoš J, Kopecká J, Doležel J. Physical distribution of homoeologous recombination in individual chromosomes of Festuca pratensis in Lolium multiflorum. Cytogenet Genome Res. 2010;129:162–72.
Article
PubMed
Google Scholar
Byrne SL, Nagy I, Pfeifer M, Armstead I, Swain S, Studer B, Mayer K, Campbell JD, Czaban A, Hentrup S, et al. A synteny-based draft genome sequence of the forage grass Lolium perenne. Plant J. 2015;84:816–26.
Article
CAS
PubMed
Google Scholar
Faville MJ, Vecchies AC, Schreiber M, Drayton MC, Hughes LJ, Jones ES, Guthridge KM, Smith KF, Sawbridge T, Spangenberg GC, et al. Functionally associated molecular genetic marker map construction in perennial ryegrass (Lolium perenne L.). Theor Appl Genet. 2004;110:12–32.
Article
CAS
PubMed
Google Scholar
Pfeifer M, Martis M, Asp T, Mayer KFX, Lübberstedt T, Byrne S, Frei U, Studer B. The perennial ryegrass GenomeZipper: targeted use of genome resources for comparative grass genomics. Plant Physiol. 2013;161:571–82.
Article
CAS
PubMed
Google Scholar
King J, Thomas A, James C, King I, Armstead I. A DArT marker genetic map of perennial ryegrass (Lolium perenne L.) integrated with detailed comparative mapping information; comparison with existing DArT marker genetic maps of Lolium perenne, L. multiflorum and Festuca pratensis. BMC Genomics. 2013;14:437.
Article
CAS
PubMed
PubMed Central
Google Scholar
Studer B, Byrne S, Nielsen RO, Panitz F, Bendixen C, Islam MS, Pfeifer M, Lübberstedt T, Asp T. A transcriptome map of perennial ryegrass (Lolium perenne L.). BMC Genomics. 2012;13:140.
Article
CAS
PubMed
PubMed Central
Google Scholar
Malik CP, Thomas PT. Karyotypic studies in some Lolium and Festuca species. Caryologia. 1966;19:167–96.
Article
Google Scholar
Rocha LC, de Oliveira Bustamante F, Silveira RAD, Torres GA, Mittelmann A, Techio VH. Functional repetitive sequences and fragile sites in chromosomes of Lolium perenne L. Protoplasma. 2015;252:451–60.
Article
PubMed
Google Scholar
Ansari HA, Ellison NW, Reader SM, Badaeva ED, Friebe B, Miller TE, Williams WM. Molecular cytogenetic organization of 5S and 18S-26S rDNA loci in white clover (Trifolium repens L.) and related species. Ann Bot. 1999;83:199–206.
Article
CAS
Google Scholar
Saitoh Y, Laemmli UK. Metaphase chromosome structure: bands arise from a differential folding path of the highly AT-rich scaffold. Cell. 1994;76:609–22.
Article
CAS
PubMed
Google Scholar
Chaves R, Adega F, Santos S, Guedes-Pinto H, Heslop-Harrison JS. In situ hybridization and chromosome banding in mammalian species. Cytogenet Genome Res. 2002;96:113–6.
Article
CAS
PubMed
Google Scholar
Anderson LK, Stack SM, Mitchell JB. An investigation of the basis of a current hypothesis for the lack of G-banding in plant chromosomes. Exp Cell Res. 1982;138:433–6.
Article
CAS
PubMed
Google Scholar
Feng J, Liu Z, Cai X, Jan CC. Toward a molecular cytogenetic map for cultivated sunflower (Helianthus annuus L.) by landed BAC/BIBAC clones. G3 Genes Genome Genet. 2013;3:31–40.
CAS
Google Scholar
Kopecký D, Martis M, Číhalíková J, Hřibová E, Vrána J, Bartoš J, Kopecká J, Cattonaro F, Stočes Š, Novák P, et al. Flow sorting and sequencing meadow fescue chromosome 4 F. Plant Physiol. 2013;163:1323–37.
Article
PubMed
PubMed Central
Google Scholar
Inda LA, Wolny E. Fluorescent in situ hybridization of the ribosomal RNA genes (5S and 35S) in the genus Lolium: Lolium canariense, the missing link with Festuca? An Jard Bot Madrid. 2013;70:97–102.
Article
Google Scholar
Ksia̧zczyk T, Taciak M, Zwierzykowski Z. Variability of ribosomal DNA sites in Festuca pratensis, Lolium perenne, and their intergeneric hybrids, revealed by FISH and GISH. J Appl Genet. 2010;51:449–60.
Article
PubMed
Google Scholar
Thomas HM, Harper JA, Meredith MR, Morgan WG, Thomas ID, Timms E, King IP. Comparison of ribosomal DNA sites in Lolium species by fluorescence in situ hybridization. Chromosome Res. 1996;4:486–90.
Article
CAS
PubMed
Google Scholar
Hasterok R, Marasek A, Donnison IS, Armstead I, Thomas A, King IP, Wolny E, Idziak D, Draper J, Jenkins G. Alignment of the genomes of Brachypodium distachyon and temperate cereals and grasses using bacterial artificial chromosome landing with fluorescence in situ hybridization. Genetics. 2006;173:349–62.
Article
CAS
PubMed
PubMed Central
Google Scholar
Jones ES, Mahoney NL, Hayward MD, Armstead IP, Jones JG, Humphreys MO, King IP, Kishida T, Yamada T, Balfourier F, et al. An enhanced molecular marker based genetic map of perennial ryegrass (Lolium perenne) reveals comparative relationships with other Poaceae genomes. Genome. 2002;45:282–95.
Article
CAS
PubMed
Google Scholar
Sim S, Chang T, Curley J, Warnke SE, Barker RE, Jung G. Chromosomal rearrangements differentiating the ryegrass genome from the Triticeae, oat, and rice genomes using common heterologous RFLP probes. Theor Appl Genet. 2005;110:1011–9.
Article
CAS
PubMed
Google Scholar
Harper J, Armstead I, Thomas A, James C, Gasior D, Bisaga M, Roberts L, King I, King J. Alien introgression in the grasses Lolium perenne (perennial ryegrass) and Festuca pratensis (meadow fescue): the development of seven monosomic substitution lines and their molecular and cytological characterization. Ann Bot. 2011;107:1313–21.
Article
PubMed
PubMed Central
Google Scholar
King J, Armstead I, Harper J, Ramsey L, Snape J, Waugh R, James C, Thomas A, Gasior D, Kelly R, et al. Exploitation of interspecific diversity for monocot crop improvement. Heredity. 2013;110:475–83.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gagic M, Faville M, Kardailsky I, Putterill J. Comparative genomics and functional characterisation of the GIGANTEA gene from the temperate forage perennial ryegrass Lolium perenne. Plant Mol Biol Report. 2015;33:1098–106.
Article
CAS
Google Scholar
King J, Armstead IP, Donnison IS, Harper JA, Roberts LA, Thomas H, Ougham H, Thomas A, Huang L, King IP. Introgression mapping in the grasses. Chromosome Res. 2007;15:105–13.
Article
CAS
PubMed
Google Scholar
Harper LC, Cande WZ. Mapping a new frontier; development of integrated cytogenetic maps in plants. Funct Integr Genomics. 2000;1:89–98.
Article
CAS
PubMed
Google Scholar
Doležel J, Kubaláková M, Paux E, Bartoš J, Feuillet C. Chromosome-based genomics in the cereals. Chromosome Res. 2007;15:51–66.
Article
PubMed
Google Scholar
Šafář J, Bartoš J, Janda J, Bellec A, Kubaláková M, Valárik M, Pateyron S, Weiserová J, Tušková R, Číhalíková J, et al. Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat. Plant J. 2004;39:960–8.
Article
PubMed
Google Scholar
Molnár I, Vrána J, Farkas A, Kubaláková M, Cseh A, Molnár-Láng M, Doležel J. Flow sorting of C-genome chromosomes from wild relatives of wheat Aegilops markgrafii, Ae. triuncialis and Ae. cylindrica, and their molecular organization. Ann Bot. 2015;116:189–200.
Article
PubMed
PubMed Central
Google Scholar
Tanaka T, Kobayashi F, Joshi GP, Onuki R, Sakai H, Kanamori H, Wu J, Šimková H, Nasuda S, Endo TR, et al. Next-generation survey sequencing and the molecular organization of wheat chromosome 6B. DNA Res. 2014;21:103–14.
Article
CAS
PubMed
Google Scholar
Kopecký D, Lukaszewski AJ, Doležel J. Meiotic behaviour of individual chromosomes of Festuca pratensis in tetraploid Lolium multiflorum. Chromosome Res. 2008;16:987–98.
Article
PubMed
Google Scholar
Kopecký D, Lukaszewski AJ, Doležel J. Cytogenetics of Festulolium (Festuca x Lolium hybrids). Cytogenet Genome Res. 2008;120:370–83.
Article
PubMed
Google Scholar
Choi HW, Lemaux PG, Cho MJ. Use of fluorescence in situ hybridization for gross mapping of transgenes and screening for homozygous plants in transgenic barley (Hordeum vulgare L.). Theor Appl Genet. 2002;106:92–100.
Article
CAS
PubMed
Google Scholar
Leggett JM, Perret SJ, Harper J, Morris P. Chromosomal localization of cotransformed transgenes in the hexaploid cultivated oat Avena sativa L. using fluorescence in situ hybridization. Heredity. 2000;84:46–53.
Article
CAS
PubMed
Google Scholar
Moeller L, Wang K. Engineering with precision: tools for the new generation of transgenic crops. Bioscience. 2008;58:391–401.
Article
Google Scholar
Pedersen C, Zimny J, Becker D, Jähne-Gärtner A, Lörz H. Localization of introduced genes on the chromosomes of transgenic barley, wheat and triticale by fluorescence in situ hybridization. Theor Appl Genet. 1997;94:749–57.
Article
CAS
Google Scholar
Salvo-Garrido H, Travella S, Billiam LJ, Harwood WA, Snape JW. The distribution of transgene insertion sites in barley determined by physical and genetic mapping. Genetics. 2004;167:1371–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Svitashev S, Ananiev E, Pawlowski WP, Somers DA. Association of transgene integration sites with chromosome rearrangements in hexaploid oat. Theor Appl Genet. 2000;100:872–80.
Article
CAS
Google Scholar
Iyer LM, Kumpatla SP, Chandrasekharan MB, Hall TC. Transgene silencing in monocots. Plant Mol Biol. 2000;43:323–46.
Article
CAS
PubMed
Google Scholar
Shou H, Frame BR, Whitham SA, Wang K. Assessment of transgenic maize events produced by particle bombardment or Agrobacterium-mediated transformation. Mol Breed. 2004;13:201–8.
Article
CAS
Google Scholar
Travella S, Ross SM, Harden J, Everett C, Snape JW, Harwood WA. A comparison of transgenic barley lines produced by particle bombardment and Agrobacterium-mediated techniques. Plant Cell Rep. 2005;23:780–9.
Article
CAS
PubMed
Google Scholar
Tang W, Newton RJ, Weidner DA. Genetic transformation and gene silencing mediated by multiple copies of a transgene in eastern white pine. J Exp Bot. 2007;58:545–54.
Article
CAS
PubMed
Google Scholar
Barro F, Martin A, Cabrera A. Transgene integration and chromosome alterations in two transgenic lines of tritordeum. Chromosome Res. 2003;11:565–72.
Article
CAS
PubMed
Google Scholar
Choi HW, Lemaux PG, Cho MJ. Increased chromosomal variation in transgenic versus nontransgenic barley (Hordeum vulgare L.) plants. Crop Sci. 2000;40:524–33.
Article
Google Scholar
Hussain SW, Richardson K, Faville M, Woodfield D. Production of haploids and double haploids in annual (Lolium multiflorum) and prennial (L. perenne) ryegrasses. In: Mercer CF, editor. Advances in Pasture Plant Breeding: Papers from the 13th Australasian Plant Breeding Conference, 18-21 April 2006, Christchurch, New Zealand. Dunedin: New Zealand Grassland Association; 2006. p. 45–8.
Google Scholar