Hi-C tasks | HiC-bench toolkit |
---|---|
Alignment | bowtie2, gtools-hic[align] |
Filtering | gtools-hic[filter] |
Genome browser tracks | gtools-hic[bin/convert] |
Matrix generation | gtools-hic[matrix] |
Matrix correction | IC, HiCNorm, hic-matrix[preprocess/normalize] |
Boundary scores | hic-matrix[domains] |
Domain calling | DI, Armatus, TopDom, hic-matrix[domains] |
Interactions | hic-matrix[loops] |
Annotations | genomic-tools |
Visualization | HiCPlotter |