Table 5 SNP markers significantly associated (−log10(p) ≥ 3) with yellow index identified by GWAS (model MLM + K + PCs) in the whole tetraploid wheat collection and in the durum sub-population evaluated in six environments (F09, V10, V12, F12, V13, V14)
From: The carotenoid biosynthetic and catabolic genes in wheat and their association with yellow pigments
SNP marker | SNP allele | Chrom | Position cM | Whole collection | Durum sub-population | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | F09 | V10 | V12 | F12 | V13 | V14 | Mean | R2 (%) | Effect | F09 | V10 | V12 | F12 | V13 | V14 | Mean | R2 (%) | Effect |
IWB73278 | C/T | 1B | 12.8 | - | - | 3 | - | - | - | - | Â | Â | - | - | - | - | - | - | - | Â | Â |
IWB4839 | C/T | 1B | 150.9 | 3.4 | - | - | - | - | - | - | Â | Â | - | - | - | - | - | - | - | Â | Â |
IWB70428 | A/C | 2A | 101.5 | 3.4 | 3 | - | - | - | - | - | Â | Â | - | - | - | - | - | - | - | Â | Â |
IWB42586 | C/T | 2A | 176.5 | - | - | - | - | 4.2 | - | - | Â | Â | - | - | - | - | - | - | - | Â | Â |
IWB55230 | C/T | 2A | 196.5 | - | - | - | - | - | - | - | Â | Â | - | - | 3.2 | - | - | - | - | Â | Â |
IWB45885 | C/T | 2B | 14.5 | - | 3.2 | - | - | - | 3.1 | - | Â | Â | - | - | - | - | - | - | - | Â | Â |
IWB1756 | A/G | 3B | 33.2 | 3.2 | - | - | - | - | - | - | Â | Â | - | - | - | - | - | - | - | Â | Â |
IWB58482 | C/T | 3B | 160.1 | - | - | - | 3.2 | - | - | - | Â | Â | - | - | - | - | - | - | - | Â | Â |
IWB43375 | A/G | 4A | 80.5 | - | 3.4 | 3.3 | - | - | - | 3.0 | 4.8 | −0.98 | - | - | - | - | - | - | - |  |  |
IWB58319 | A/G | 4B | 17.7 | - | 3.1 | 3.3 | - | - | - | 3.0 | 4.9 | −0.58 | - | 3.6 | - | - | - | 3.1 | 3.3 | 10.1 | −0.8 |
IWB72011 | C/T | 4B | 43.9 | - | 3.4 | - | - | 3.1 | - | 3.4 | 5.5 | 0.72 | - | 3 | - | - | 3 | 3.7 | 3.3 | 11.1 | 1.33 |
IWB72977 | A/G | 5A | 113.7 | - | - | - | - | - | 3.1 | - | Â | Â | Â | - | - | - | - | - | - | Â | Â |
IWB71274 | A/C | 5B | 44 | - | - | - | - | - | 3.4 | - | Â | Â | Â | - | - | - | - | - | - | Â | Â |
IWB43483 | A/G | 5B | 120.1 | - | 3.5 | 3 | - | - | - | 3.1 | 5.1 | −0.72 |  | - | - | - | - | - | - |  |  |
IWB62049 | G/T | 5B | 167.5 | - | - | - | - | 3.2 | - | - | Â | Â | Â | - | - | - | - | - | - | Â | Â |
IWB14365 | A/G | 6A | 93.4 | - | - | - | 3.2 | - | - | - | Â | Â | Â | - | - | 3.1 | - | - | - | Â | Â |
IWB73296 | A/G | 6A | 115.3 | - | - | - | 3.2 | - | - | - | Â | Â | Â | - | - | - | - | - | - | Â | Â |
IWB68640 | G/T | 7A | 14.1 | 3.2 | - | - | - | 3.2 | 4.6 | 3.5 | 5.7 | 0.81 | Â | - | - | - | - | - | - | Â | Â |
IWB8374 | A/G | 7A | 61.6 | 3.5 | 3.1 | - | 3.4 | - | - | - | Â | Â | 3.9 | - | 3.2 | 3.2 | - | 3.5 | 3.7 | 12.6 | 1.08 |
IWB72567 | C/T | 7A | 102.3 | 4.1 | 5.5 |  | 4.1 | 3.6 | - | 3.5 | 6.2 | −0.74 | 3.4 | 4.9 | 4 | 4 | 4.5 | 3.5 | 5 | 18.4 | −1.25 |
IWB20381 | C/T | 7A | 168.8 | 3.1 | - | - | - | - | - | - | Â | Â | - | - | - | - | - | - | - | Â | Â |
IWB59875 | C/T | 7A | 180.3 | - | 5.4 | 3.1 | 4.2 | 3.2 | 3.1 | 3.7 | 6.1 | 0.83 | - | 4.3 | 3.1 | 4 | - | - | 3.8 | 12.2 | 0.92 |
IWB49295 | A/G | 7A | 203.4 | - | 4.2 | - | - | 3.1 | 3.9 | 3.5 | 5.8 | −0.78 | - | - | - | - | - | - | - |  |  |
IWB72335 | A/C | 7B | 58.3 | - | - | - | - | 3.1 | - | - | Â | Â | - | - | - | - | - | - | - | Â | Â |
IWB9496 | A/G | 7B | 185.2 | - | - | - | - | - | 4 | 3.5 | 5.8 | −0.72 | - | - | - | - | - | - | - |  |  |