Table 2 Significant motif pairs related to CRISPR repeats
From: Unsupervised statistical discovery of spaced motifs in prokaryotic genomes
Genome | Pattern |
|---|---|
Anaeromyxobacter dehalogenans 2CP 1 | GGGGA(N)43TCCCC |
Candidatus Desulforudis audaxviator MP104C | AAACG(N)35GTTTC GAAAC(N)35GGTTT AAACT(N)35GTTTC GAAAC(N)36GTTTC TGAAA(N)39TTTCA CTGAA(N)40TTTCA CTGAA(N)41TTCAG |
Clostridium thermocellum ATCC 27405 | TACGA(N)52CCTCA GTACG(N)52TCCTC ATGAG(N)53TCGTA TGAGG(N)53CGTAC ATGAG(N)54CGTAC ACCTA(N)55TATCG CCTAT(N)56TCGTA ACCTA(N)56ATCGT CTATG(N)56CGTAC |
Corynebacterium aurimucosum ATCC 700975 | GGGGA(N)43TCCCC CGGGG(N)44TCCCC CGGGG(N)45CCCCG GGGGA(N)45CCCGC CGGGG(N)46CCCGC |
Corynebacterium jeikeium K411 | GGGGA(N)43TCCCC CGGGG(N)44TCCCC CGGGG(N)45CCCCG GGGGA(N)45CCCGC CGGGG(N)46CCCGC |
Corynebacterium urealyticum DSM 7109 | GGGGA(N)43TCCCC CGGGG(N)44TCCCC GGGGA(N)45CCCGC CGGGG(N)45CCCCG |