Comparative genomics of host adaptive traits in Xanthomonas translucens pv. graminis

BMC Genomics

Table 3 Genome features of X. translucens strains

Strain^a	X. t. pv. graminis Xtg29	X. t. pv. graminis Xtg2	X. t. pv. graminis Xtg9	X. t. pv. graminis Xtg10	X. t. pv. graminis NCPPB 3709	X. t. pv. graminis ICMP 6431	X. t. pv. graminis CFBP 2053^PT*	X. t. pv. arrhenatheri LMG 727^PT*	X. t. pv. poae LMG 728^PT*	X. t. pv. phlei LMG 730^PT*	X. t. pv. cerealis CFBP 2541^PT*	X. t. pv. undulosa Xtu4699^*	X. t. pv. translucens DSM 18974^T*	X. t. DAR61454*
Attribute	X. t. pv. graminis Xtg29	X. t. pv. graminis Xtg2	X. t. pv. graminis Xtg9	X. t. pv. graminis Xtg10	X. t. pv. graminis NCPPB 3709	X. t. pv. graminis ICMP 6431	X. t. pv. graminis CFBP 2053^PT*	X. t. pv. arrhenatheri LMG 727^PT*	X. t. pv. poae LMG 728^PT*	X. t. pv. phlei LMG 730^PT*	X. t. pv. cerealis CFBP 2541^PT*	X. t. pv. undulosa Xtu4699^*	X. t. pv. translucens DSM 18974^T*	X. t. DAR61454*
Genome size	4.2 Mb	4.2 Mb	4.1 Mb	4.2 Mb	4.2 Mb	4.1 Mb	4.3 Mb	4.8 Mb	4.6 Mb	4.4 Mb	4.5 Mb	4.6 Mb	4.7 Mb	4.5 Mb
Protein coding genes	3543	3529	3519	3529	3553	3487	3851	3871	3845	3744	3888	3835	3957	3776
Genes with function prediction	2328	2323	2317	2326	2367	2297	2572	2531	2505	2477	2466	2540	2586	2439
Genes with Pfam domains	2795	2795	2788	2789	2825	2749	3069	3062	3009	2980	2965	3055	3091	2907
Genes with transmembrane helices	877	876	866	867	887	865	936	953	933	918	910	894	951	851
Genes with signal peptides	549	551	555	554	551	545	553	584	584	552	521	531	563	521

^a Pathotype strains (^PT) and the X. translucens type strain (^T) are indicated. Data obtained by using the same annotation strategy as applied for the six Xtg strains (Xtg29, Xtg2, Xtg9, Xtg10, NCPPB 3709 and ICMP 6431) sequenced in this study are indicted by asterisks (*)

ISSN: 1471-2164