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Fig. 2 | BMC Genomics

Fig. 2

From: Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Fig. 2

Relationships between population genetic parameters for nine populations of Arabidopsis halleri estimated on the basis of 19 microsatellites and 2 million genome-wide single nucleotide polymorphisms (SNPs). a Relationship between expected genome-wide SNP heterozygosity (SNP-H e) and expected microsatellite heterozygosity (SSR-H e). The insert illustrates differences in H e between SNPs and microsatellites across the nine A. halleri populations. b Relationship between genome-wide diversity estimated by average θ Watterson across 20,617 genes and expected heterozygosity for all 19 microsatellites (filled circles) and separately for species-specific (open triangles) and cross-species microsatellites (open squares). c Comparisons of allelic richness (A r) with genome-wide SNP variation estimated by θ Watterson

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BMC Genomics

ISSN: 1471-2164

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