Table 4 Putative effectors showing an excess of non-synonymous effect mutations
From: Landscape of genomic diversity and host adaptation in Fusarium graminearum
Ensembl gene ID | FGSG | Chrom | Gene start (bp) | Gene end (bp) | Gene description | InterPro ID | InterPro short description | Homology | Protein length | % cysteine | variants LoF | variants Non-Synonymous | Total variantsa | Ratio of non-synonymous effect mutations | Polymorphic Islands | In Planta Expression [50] |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
FGRRES_11675 | FGSG_11675 | I | 356,230 | 357,118 | Uncharacterized protein | - | - | - | 279 | 1.07 | 0 | 7 | 10 | 0.7 | Yes | Wheat |
FGRRES_01778 | FGSG_01778 | I | 5,860,579 | 5,861,567 | Uncharacterized protein | - | - | - | 277 | 2.16 | 0 | 5 | 9 | 0.6 | Yes | Wheat |
FGRRES_02228 | FGSG_02228 | I | 7,225,618 | 7,227,797 | Uncharacterized protein | IPR000120, IPR023631 | Amidase | glutamyl-trna amidotransferase subunit a [Fusarium langsethiae] | 664 | 0.75 | 0 | 10 | 19 | 0.5 | Yes | Wheat & Barley |
FGRRES_02269 | FGSG_02269 | I | 7,357,559 | 7,358,332 | Uncharacterized protein | - | - | - | 237 | 2.1 | 0 | 4 | 7 | 0.6 | Yes | Wheat & Barley |
FGRRES_13692 | FGSG_13692 | I | 9,626,040 | 9,628,066 | Uncharacterized protein | - | - | - | 499 | 1.6 | 0 | 4 | 7 | 0.6 | No | Wheat & Barley |
FGRRES_07993 | FGSG_07993 | II | 110,904 | 113,251 | Uncharacterized protein | IPR001764, IPR002772, IPR017853, IPR026891, IPR026892 | Glycoside hydrolase/Fn3 like | exo- -beta-xylosidase bxlb [F. langsethiae] | 766 | 1.3 | 0 | 5 | 7 | 0.7 | Yes | Wheat & Barley |
FGRRES_17022 | - | II | 1,652,257 | 1,656,378 | Uncharacterized protein | - | - | muc1-extracellular alpha- -glucan glucosidase [F. langsethiae] | 1340 | 0.3 | 0 | 5 | 6 | 0.8 | No | Wheat |
FGRRES_16333 | - | II | 4,194,219 | 4,196,939 | Uncharacterized protein | - | - | - | 887 | 3.27 | 3 | 41 | 80 | 0.6 | Yes | Barley |
FGRRES_03274 | FGSG_03274 | II | 4,695,334 | 4,698,042 | Uncharacterized protein | IPR029167 | Mug117 | - | 884 | 1.92 | 0 | 12 | 22 | 0.5 | Yes | Wheat & Barley |
FGRRES_03521 | FGSG_03521 | II | 5,366,512 | 5,367,123 | Uncharacterized protein | IPR009327, IPR011051, IPR014710 | RmlC-like cupin domain | putative cupin family protein [Diaporthe ampelina] | 184 | 1.62 | 1 | 5 | 7 | 0.9 | Yes | Wheat |
FGRRES_03612 | FGSG_03612 | II | 5,604,284 | 5,605,254 | Uncharacterized protein | IPR001087, IPR013830 | Lipase_GDSL, SGNH hydrolase-type esterase domain | gdsl lipase acylhydrolase [F. langsethiae] | 289 | 1.72 | 0 | 4 | 7 | 0.6 | Yes | Wheat & Barley |
FGRRES_12405_M | FGSG_12405 | II | 5,622,275 | 5,622,943 | Uncharacterized protein | IPR003609 | Pan_apple | - | 222 | 4.04 | 0 | 8 | 9 | 0.9 | Yes | Wheat & Barley |
FGRRES_03944 | FGSG_03944 | II | 6,465,510 | 6,466,808 | Uncharacterized protein | IPR011042 | Six-bladed beta-propeller, TolB-like | serum paraoxonase arylesterase [F. langsethiae] | 432 | 0.46 | 0 | 5 | 8 | 0.6 | Yes | Wheat & Barley |
FGRRES_03972 | FGSG_03972 | II | 6,548,953 | 6,550,914 | Uncharacterized protein | IPR006094, IPR012951, IPR016166, IPR016169 | flavin adenine dinucleotide linked oxydase; Berberine & berberine-like; CO dehydrogenase flavoprotein-like | 6-hydroxy-d-nicotine oxidase [F. langsethiae] | 585 | 1.54 | 0 | 7 | 10 | 0.7 | Yes | Barley |
FGRRES_04429 | FGSG_04429 | II | 7,989,077 | 7,992,064 | Uncharacterized protein | IPR003609 | Pan_apple | - | 995 | 5.22 | 0 | 4 | 7 | 0.6 | No | Wheat |
FGRRES_12210 | FGSG_12210 | II | 8,620,515 | 8,622,358 | Uncharacterized protein | IPR003609 | Pan_apple | - | 596 | 2.18 | 1 | 10 | 18 | 0.6 | Yes | Wheat |
FGRRES_04646_M | FGSG_04646 | II | 8,655,498 | 8,656,180 | Uncharacterized protein | - | - | - | 225 | 2.65 | 2 | 12 | 22 | 0.6 | Yes | Wheat |
FGRRES_04689 | FGSG_04689 | II | 8,765,660 | 8,767,148 | Rhamnogalacturonase A | IPR000743, IPR011050, IPR012334 | Glycoside hydrolase, family 28; Pectin lyase | probable rhamnogalacturonase A precursor [Fusarium fujikuroi IMI 58289] | 446 | 2.46 | 0 | 7 | 13 | 0.5 | Yes | Wheat & Barley |
FGRRES_05719 | FGSG_05719 | III | 3,177,333 | 3,180,794 | Uncharacterized protein | IPR029167 | Meiotically up-regulated gene 117 protein | - | 1153 | 1.73 | 0 | 4 | 6 | 0.7 | No | Wheat & Barley |
FGRRES_05847 | FGSG_05847 | III | 3,549,004 | 3,550,475 | Uncharacterized protein | IPR001002, IPR002509, IPR011330, IPR018371 | Glycoside hydrolase/deacetylase, beta/alpha-barre; Chitin-binding, type 1 | bifunctional xylanase deacetylase [F. langsethiae] | 454 | 5.71 | 0 | 3 | 5 | 0.6 | No | Wheat & Barley & Maize |
FGRRES_12835 | FGSG_12835 | III | 3,658,250 | 3,659,015 | Uncharacterized protein | - | - | - | 162 | 2.45 | 0 | 4 | 7 | 0.6 | No | Wheat |
FGRRES_16623 | - | III | 4,751,122 | 4,755,561 | Uncharacterized protein | IPR013830 | SGNH hydrolase-type esterase domain | chitinase [Fusarium oxysporum Fo47] | 1461 | 1.92 | 0 | 6 | 11 | 0.5 | No | Wheat |
FGRRES_13876 | FGSG_13876 | III | 6,370,523 | 6,371,374 | Uncharacterized protein | IPR013781 | glycosyl hydrolase catalytic domain | Glycoside hydrolase, superfamily [Cordyceps confragosa RCEF 1005] | 283 | 1.41 | 3 | 18 | 40 | 0.5 | Yes | Wheat |
FGRRES_17469 | FGSG_13850/FGSG_13851 | III | 6,711,891 | 6,714,195 | Uncharacterized protein | - | - | related to DAN4-Cell wall mannoprotein [Fusarium proliferatum] | 719 | 1.53 | 0 | 7 | 12 | 0.6 | Yes | Barley |
FGRRES_11379 | FGSG_11379 | III | 7,412,583 | 7,413,959 | Uncharacterized protein | - | - | - | 458 | 1.96 | 0 | 12 | 23 | 0.5 | Yes | Wheat |
FGRRES_06610 | FGSG_06610 | IV | 582,670 | 585,011 | Uncharacterized protein | IPR018946, IPR029052, IPR032093 | Alkaline phosphatase D-related | alkaline phosphatase D precursor [Fusarium fujikuroi] | 631 | 0.79 | 0 | 5 | 9 | 0.6 | No | Wheat & Barley |
FGRRES_07686_M | FGSG_07686 | IV | 4,196,885 | 4,197,838 | Uncharacterized protein | - | - | activator of stress protein 1 [F. langsethiae] | 317 | 2.2 | 0 | 8 | 14 | 0.6 | Yes | Wheat & Barley |
FGRRES_07699 | FGSG_07699 | IV | 4,231,666 | 4,232,190 | Uncharacterized protein | - | - | - | 174 | 2.29 | 1 | 5 | 10 | 0.6 | Yes | Wheat & Barley |
FGRRES_09118 | FGSG_09118 | IV | 7,533,260 | 7,536,888 | Uncharacterized protein | IPR001002, IPR001223, IPR011583, IPR013781, IPR017853, IPR018371, IPR029070 | Chitin binding; chitinase II | related to chitinase [Fusarium proliferatum] | 1159 | 3.62 | 3 | 10 | 21 | 0.6 | Yes | Wheat |