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Table 4 Putative effectors showing an excess of non-synonymous effect mutations

From: Landscape of genomic diversity and host adaptation in Fusarium graminearum

Ensembl gene ID FGSG Chrom Gene start (bp) Gene end (bp) Gene description InterPro ID InterPro short description Homology Protein length % cysteine variants LoF variants Non-Synonymous Total variantsa Ratio of non-synonymous effect mutations Polymorphic Islands In Planta Expression [50]
FGRRES_11675 FGSG_11675 I 356,230 357,118 Uncharacterized protein - - - 279 1.07 0 7 10 0.7 Yes Wheat
FGRRES_01778 FGSG_01778 I 5,860,579 5,861,567 Uncharacterized protein - - - 277 2.16 0 5 9 0.6 Yes Wheat
FGRRES_02228 FGSG_02228 I 7,225,618 7,227,797 Uncharacterized protein IPR000120, IPR023631 Amidase glutamyl-trna amidotransferase subunit a [Fusarium langsethiae] 664 0.75 0 10 19 0.5 Yes Wheat & Barley
FGRRES_02269 FGSG_02269 I 7,357,559 7,358,332 Uncharacterized protein - - - 237 2.1 0 4 7 0.6 Yes Wheat & Barley
FGRRES_13692 FGSG_13692 I 9,626,040 9,628,066 Uncharacterized protein - - - 499 1.6 0 4 7 0.6 No Wheat & Barley
FGRRES_07993 FGSG_07993 II 110,904 113,251 Uncharacterized protein IPR001764, IPR002772, IPR017853, IPR026891, IPR026892 Glycoside hydrolase/Fn3 like exo- -beta-xylosidase bxlb [F. langsethiae] 766 1.3 0 5 7 0.7 Yes Wheat & Barley
FGRRES_17022 - II 1,652,257 1,656,378 Uncharacterized protein - - muc1-extracellular alpha- -glucan glucosidase [F. langsethiae] 1340 0.3 0 5 6 0.8 No Wheat
FGRRES_16333 - II 4,194,219 4,196,939 Uncharacterized protein - - - 887 3.27 3 41 80 0.6 Yes Barley
FGRRES_03274 FGSG_03274 II 4,695,334 4,698,042 Uncharacterized protein IPR029167 Mug117 - 884 1.92 0 12 22 0.5 Yes Wheat & Barley
FGRRES_03521 FGSG_03521 II 5,366,512 5,367,123 Uncharacterized protein IPR009327, IPR011051, IPR014710 RmlC-like cupin domain putative cupin family protein [Diaporthe ampelina] 184 1.62 1 5 7 0.9 Yes Wheat
FGRRES_03612 FGSG_03612 II 5,604,284 5,605,254 Uncharacterized protein IPR001087, IPR013830 Lipase_GDSL, SGNH hydrolase-type esterase domain gdsl lipase acylhydrolase [F. langsethiae] 289 1.72 0 4 7 0.6 Yes Wheat & Barley
FGRRES_12405_M FGSG_12405 II 5,622,275 5,622,943 Uncharacterized protein IPR003609 Pan_apple - 222 4.04 0 8 9 0.9 Yes Wheat & Barley
FGRRES_03944 FGSG_03944 II 6,465,510 6,466,808 Uncharacterized protein IPR011042 Six-bladed beta-propeller, TolB-like serum paraoxonase arylesterase [F. langsethiae] 432 0.46 0 5 8 0.6 Yes Wheat & Barley
FGRRES_03972 FGSG_03972 II 6,548,953 6,550,914 Uncharacterized protein IPR006094, IPR012951, IPR016166, IPR016169 flavin adenine dinucleotide linked oxydase; Berberine & berberine-like; CO dehydrogenase flavoprotein-like 6-hydroxy-d-nicotine oxidase [F. langsethiae] 585 1.54 0 7 10 0.7 Yes Barley
FGRRES_04429 FGSG_04429 II 7,989,077 7,992,064 Uncharacterized protein IPR003609 Pan_apple - 995 5.22 0 4 7 0.6 No Wheat
FGRRES_12210 FGSG_12210 II 8,620,515 8,622,358 Uncharacterized protein IPR003609 Pan_apple - 596 2.18 1 10 18 0.6 Yes Wheat
FGRRES_04646_M FGSG_04646 II 8,655,498 8,656,180 Uncharacterized protein - - - 225 2.65 2 12 22 0.6 Yes Wheat
FGRRES_04689 FGSG_04689 II 8,765,660 8,767,148 Rhamnogalacturonase A IPR000743, IPR011050, IPR012334 Glycoside hydrolase, family 28; Pectin lyase probable rhamnogalacturonase A precursor [Fusarium fujikuroi IMI 58289] 446 2.46 0 7 13 0.5 Yes Wheat & Barley
FGRRES_05719 FGSG_05719 III 3,177,333 3,180,794 Uncharacterized protein IPR029167 Meiotically up-regulated gene 117 protein - 1153 1.73 0 4 6 0.7 No Wheat & Barley
FGRRES_05847 FGSG_05847 III 3,549,004 3,550,475 Uncharacterized protein IPR001002, IPR002509, IPR011330, IPR018371 Glycoside hydrolase/deacetylase, beta/alpha-barre; Chitin-binding, type 1 bifunctional xylanase deacetylase [F. langsethiae] 454 5.71 0 3 5 0.6 No Wheat & Barley & Maize
FGRRES_12835 FGSG_12835 III 3,658,250 3,659,015 Uncharacterized protein - - - 162 2.45 0 4 7 0.6 No Wheat
FGRRES_16623 - III 4,751,122 4,755,561 Uncharacterized protein IPR013830 SGNH hydrolase-type esterase domain chitinase [Fusarium oxysporum Fo47] 1461 1.92 0 6 11 0.5 No Wheat
FGRRES_13876 FGSG_13876 III 6,370,523 6,371,374 Uncharacterized protein IPR013781 glycosyl hydrolase catalytic domain Glycoside hydrolase, superfamily [Cordyceps confragosa RCEF 1005] 283 1.41 3 18 40 0.5 Yes Wheat
FGRRES_17469 FGSG_13850/FGSG_13851 III 6,711,891 6,714,195 Uncharacterized protein - - related to DAN4-Cell wall mannoprotein [Fusarium proliferatum] 719 1.53 0 7 12 0.6 Yes Barley
FGRRES_11379 FGSG_11379 III 7,412,583 7,413,959 Uncharacterized protein - - - 458 1.96 0 12 23 0.5 Yes Wheat
FGRRES_06610 FGSG_06610 IV 582,670 585,011 Uncharacterized protein IPR018946, IPR029052, IPR032093 Alkaline phosphatase D-related alkaline phosphatase D precursor [Fusarium fujikuroi] 631 0.79 0 5 9 0.6 No Wheat & Barley
FGRRES_07686_M FGSG_07686 IV 4,196,885 4,197,838 Uncharacterized protein - - activator of stress protein 1 [F. langsethiae] 317 2.2 0 8 14 0.6 Yes Wheat & Barley
FGRRES_07699 FGSG_07699 IV 4,231,666 4,232,190 Uncharacterized protein - - - 174 2.29 1 5 10 0.6 Yes Wheat & Barley
FGRRES_09118 FGSG_09118 IV 7,533,260 7,536,888 Uncharacterized protein IPR001002, IPR001223, IPR011583, IPR013781, IPR017853, IPR018371, IPR029070 Chitin binding; chitinase II related to chitinase [Fusarium proliferatum] 1159 3.62 3 10 21 0.6 Yes Wheat
  1. a total variant numbers include variant detected within the 100 base pairs located in upstream and downstream of the genic sequences