| Seed 05 | Seed 07 | Seed 08 | Seed 09 | Leaf | Root | Stem | All tissues |
---|---|---|---|---|---|---|---|---|
Surviving Paired Reads | 33,047,108 | 34,553,732 | 35,507,768 | 34,083,440 | 27,518,992 | 47,701,648 | 28,792,480 | 241,205,168 |
Transcript number before rra | 2,300,488 | 319,916 | 284,019 | 266,532 | 149,469 | 222,747 | 117,629 | 669,871 |
Transcripts number after rra | 41,963 | 45,511 | 43,324 | 47,423 | 32,001 | 46,168 | 33,244 | 83,349 |
Genes | 38,088 | 42,292 | 40,042 | 43,316 | 28,246 | 38,972 | 28,513 | 74,724 |
Total bases | 33,259,794 | 31,598,526 | 31,320,780 | 34,985,208 | 24,432,147 | 36,146,334 | 29,060,739 | 54,846,111 |
GC % | 53 | 53 | 53 | 53 | 52 | 53 | 53 | 53 |
Number of protein coding transcripts | ||||||||
 > = 1 kbp | 9,887 | 8,024 | 8,628 | 9,873 | 7,207 | 10,922 | 9,803 | 13,019 |
 Max contig lenght | 11,865 | 10,923 | 11,733 | 9,633 | 11,736 | 14,148 | 12,282 | 14,247 |
 average contig lenght | 776 | 694 | 722 | 737 | 763 | 782 | 874 | 658 |
 N50 | 999 | 834 | 900 | 927 | 966 | 1,017 | 1143 | 762 |
 N50 longest isoform | 1,038 | 849 | 915 | 951 | 1,014 | 1,098 | 1,218 | 783 |
BLASTp: | ||||||||
 hit % B. distachyon | 97 | 98 | 98 | 97 | 98 | 97 | 98 | 97 |
 hit % Uniprot | 96 | 96 | 97 | 96 | 96 | 95 | 96 | 94 |
 % GO mapped | 72 | 73 | 74 | 74 | 75 | 74 | 73 | 73 |
 % functionally annotated | 56 | 58 | 58 | 56 | 62 | 55 | 58 | 50 |