Skip to main content

Table 1 Summary of the raw data obtained by RAD-tag resequencing

From: Footprints of domestication revealed by RAD-tag resequencing in loquat: SNP data reveals a non-significant domestication bottleneck and a single domestication event

Group Genotype ID Raw data
Reads (M) Bases (Mb) GC (%) Q20 (%)
Wild TS_W 23.92 1028.62 35.49 99.01
WF_W 14.16 608.68 35.15 98.55
BD_W 32.03 1357.43 35.86 99.21
LC_W 16.11 676.79 35.01 98.91
SM_W 17.91 788.21 35.25 98.49
MT_W 18.08 741.38 36.96 98.77
BJ_W 33.70 1381.59 34.66 98.66
AL_W 33.19 1460.43 34.98 99.01
HZ_W 57.80 2369.91 34.76 98.95
Average 27.43 1157.00 35.35 98.84
Cultivated DWX_C 24.82 1067.40 34.96 98.89
BY_C 34.57 1486.72 35.09 99.09
YN_C 32.03 1441.15 35.03 99.11
SJPP_C 23.76 1021.64 34.97 99.14
RTBS_C 67.82 2994.30 34.72 98.20
ZZ6H_C 23.42 1030.38 35.00 99.17
MM_C 95.07 3898.03 34.68 98.90
MBC_C 27.61 1214.65 35.06 99.13
Biano_C 23.10 947.06 34.79 99.08
Algeria_C 21.10 886.33 34.90 99.19
Average 37.33 1598.77 34.92 98.99
Total Mean 32.64 1389.51 35.12 98.92
  1. See TableĀ 6 for genotypes detail