Skip to main content

Table 1 Summary of RNAseq data for proliferation experiment

From: Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

Line Temp °C Replicate PE reads Median read quality R1 Median read quality R2 Trimmed PE reads % mapped % concordant Estimated insert mean (bp) Total observed genes Mean expressed genes % expressed genes
RBC2 33 A 18492232 37.3 37.2 17160507 90.0 84.3 199 16527 15065 71.7
   B 15688650 37.3 37.2 14526144 89.8 84.0 199 16305
  38 A 17462871 37.1 36.9 15938819 88.3 81.6 227 16408 14524 69.1
   B 16861464 37.1 36.9 15388173 88.4 81.8 226 16186
  43 A 12482369 37.1 36.8 11301872 88.4 82.2 194 15864 14241 67.8
   B 16552504 36.9 36.8 15135313 87.3 80.5 199 15864
F-Line 33 A 15640211 37.2 37.1 14477399 89.7 84.0 199 15734 15091 71.8
   B 15574971 37.2 37.1 14421868 89.6 83.5 199 15814
  38 A 15615066 37.2 37 14320803 88.5 81.9 218 15343 14586 69.4
   B 16932717 37.1 36.9 15464075 89.1 82.5 226 15365
  43 A 16624565 37.1 36.8 15156088 89.1 81.9 225 15886 14771 70.3
   B 17476215 37.1 37 16091169 89.2 82.8 198 15874
Mean    16283652.9 37.14 36.98 14948529.2 88.95 82.58 209.1 15930.8 14713 70.03
  1. For each library the total number of concatenated reads, median read qualities (R1 and R2), estimated mean insert length (bp), number of and percentage of aligned reads, percentage of concordant reads, and the number and percentage of observed genes (mapped reads >1) and expressed genes (mean group normalized read count >3.0) are given
\