Table 3 Evaluation of scaffolds generated by SALSA and LACHESIS for the Capra hircus assembly
From: Scaffolding of long read assemblies using long range contact information
Metric | SALSA | LACHESIS |
|---|---|---|
Number of scaffolds | 127 | 990 |
Total bases | 2.44 Gb | 2.62 Gb |
NG50 | 46.64 Mb | 88.79 Mb |
% Aligned bases | 99.88% | 99.85% |
Breakpoints | 8514 | 14035 |
Relocations | 67 | 374 |
Translocations | 213 | 601 |
Inversions | 105 | 439 |