Table 4 Evaluation of scaffolds generated by SALSA and LACHESIS for Capra hircus assembly generated using optical map data
From: Scaffolding of long read assemblies using long range contact information
Metric | SALSA | LACHESIS |
|---|---|---|
Number of scaffolds | 90 | 596 |
Total bases | 2.22 Gb | 2.61 Gb |
NG50 | 87.74 Mb | 87.34 Mb |
% Aligned bases | 97.00% | 99.91% |
Breakpoints | 10718 | 14741 |
Relocations | 118 | 167 |
Translocations | 185 | 407 |
Inversions | 130 | 126 |