He XJ, Chen T, Zhu JK. Regulation and function of DNA methylation in plants and animals. Cell Res. 2011;21(3):442.
Article
CAS
PubMed
PubMed Central
Google Scholar
Guo H, Zhu P, Yan L, Li R, Hu B, Lian Y, Yan J, Ren X, Lin S, Li J, et al. The DNA methylation landscape of human early embryos. Nature. 2014;511(7511):606–10.
Article
CAS
PubMed
Google Scholar
Agius F, Kapoor A, Zhu JK. Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation. Proc Natl Acad Sci U S A. 2006;103(31):11796–801.
Article
CAS
PubMed
PubMed Central
Google Scholar
Abdoli R, Zamani P, Mirhoseini SZ, Ghavi Hossein-Zadeh N, Nadri S. A review on prolificacy genes in sheep. Reprod Domest Anim. 2016;51(5):631–7.
Article
CAS
PubMed
Google Scholar
Lomniczi A, Loche A, Castellano JM, Ronnekleiv OK, Bosch M, Kaidar G, Knoll JG, Wright H, Pfeifer GP, Ojeda SR. Epigenetic control of female puberty. Nat Neurosci. 2013;16(3):281–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Lomniczi A, Wright H, Ojeda SR. Epigenetic regulation of female puberty. Front Neuroendocrinol. 2015;36:90–107.
Article
CAS
PubMed
Google Scholar
Yuan XL, Gao N, Xing Y, Zhang HB, Zhang AL, Liu J, He JL, Xu Y, Lin WM, Chen ZM. Profiling the genome-wide DNA methylation pattern of porcine ovaries using reduced representation bisulfite sequencing. Sci Rep. 2015;6:22138.
Article
Google Scholar
Yang C, Ye J, Li X, Gao X, Zhang K, Luo L, Ding J, Zhang Y, Li Y, Cao H, et al. DNA Methylation patterns in the hypothalamus of female pubertal goats. PLoS One. 2016;11(10):e0165327.
Article
PubMed
PubMed Central
Google Scholar
Kurdyukov S, Bullock M. DNA Methylation analysis: choosing the right method. Biology (Basel). 2016;5(1)
Sun D, Xi Y, Rodriguez B, Park HJ, Tong P, Meong M, Goodell MA, Li W. MOABS: model based analysis of bisulfite sequencing data. Genome Biol. 2014;15(2):R38.
Article
PubMed
PubMed Central
Google Scholar
Schultz MD, Schmitz RJ. Ecker JR: 'Leveling' the playing field for analyses of single-base resolution DNA methylomes. Trends Genet. 2012;28(12):583.
Article
CAS
PubMed
PubMed Central
Google Scholar
Young MD, Wakefield MJ, Smyth GK, Oshlack A. Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol. 2010;11(2):1–12.
Article
Google Scholar
Mao X, Cai T, Olyarchuk JG, Wei L. Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary. Bioinformatics. 2005;21(19):3787–93.
Article
CAS
PubMed
Google Scholar
Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, Mering CV. STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 2013;41(Database issue):808–15.
Article
Google Scholar
Hu Y, Xu H, Li Z, Zheng X, Jia X, Nie Q, Zhang X. Comparison of the genome-wide DNA methylation profiles between fast-growing and slow-growing broilers. PLoS One. 2013;8(2):e56411.
Article
CAS
PubMed
PubMed Central
Google Scholar
Xu J, Bao X, Peng Z, Wang L, Du L, Niu W, Sun Y. Comprehensive analysis of genome-wide DNA methylation across human polycystic ovary syndrome ovary granulosa cell. Oncotarget. 2016;7(19):27899-909.
Hao Y, Cui Y, Gu X. Genome-wide DNA methylation profiles changes associated with constant heat stress in pigs as measured by bisulfite sequencing. Sci Rep. 2016;6:27507.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zhang D, Cong J, Shen H, Wu Q, Wu X. Genome-wide identification of aberrantly methylated promoters in ovarian tissue of prenatally androgenized rats. Fertil Steril. 2014;102(5):1458–67.
Article
CAS
PubMed
Google Scholar
Russo V, Bernabo N, Di Giacinto O, Martelli A, Mauro A, Berardinelli P, Curini V, Nardinocchi D, Mattioli M, Barboni B. H3K9 trimethylation precedes DNA methylation during sheep oogenesis: HDAC1, SUV39H1, G9a, HP1, and Dnmts are involved in these epigenetic events. J Histochem Cytochem. 2013;61(1):75–89.
Article
CAS
PubMed
PubMed Central
Google Scholar
Barboni B, Russo V, Cecconi S, Curini V, Colosimo A, Garofalo ML, Capacchietti G, Di Giacinto O, Mattioli M. In vitro grown sheep preantral follicles yield oocytes with normal nuclear-epigenetic maturation. PLoS One. 2011;6(11):e27550.
Article
CAS
PubMed
PubMed Central
Google Scholar
Colosimo A, Di Rocco G, Curini V, Russo V, Capacchietti G, Berardinelli P, Mattioli M, Barboni B. Characterization of the methylation status of five imprinted genes in sheep gametes. Anim Genet. 2009;40(6):900–8.
Article
CAS
PubMed
Google Scholar
Russo V, Martelli A, Berardinelli P, Di Giacinto O, Bernabo N, Fantasia D, Mattioli M, Barboni B. Modifications in chromatin morphology and organization during sheep oogenesis. Microsc Res Tech. 2007;70(8):733–44.
Article
CAS
PubMed
Google Scholar
Cao J, Wei C, Zhang S, Capellini TD, Zhang L, Zhao F, Li L, Zhong T, Wang L, Du L. Screening of reproduction-related single-nucleotide variations from MeDIP-seq data in sheep. Mol Reprod Dev. 2016;83(11):958.
Article
CAS
PubMed
Google Scholar
Lynch EW, Coyle CS, Lorgen M, Campbell EM, Bowman AS, Stevenson TJ. Cyclical DNA Methyltransferase 3a expression is a seasonal and Estrus timer in reproductive tissues. Endocrinology. 2016;157(6):2469–78.
Article
CAS
PubMed
Google Scholar
Lister R, Pelizzola M, Kida YS, Hawkins RD, Nery JR, Hon G, Antosiewiczbourget J, O'Malley R, Castanon R, Klugman S. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature. 2014;514(7520):68–73.
Article
Google Scholar
Zhang S, Qin C, Cao G, Guo L, Feng C, Zhang W. Genome-wide Analysis of DNA Methylation Profiles in a Senescence-accelerated Mouse Prone 8 Brain using Whole-genome Bisulfite Sequencing. Bioinformatics. 2017;33(11):1591–95.
Article
PubMed
Google Scholar
Yuan XL, Gao N, Xing Y, Zhang HB, Zhang AL, Liu J, He JL, Xu Y, Lin WM, Chen ZM, et al. Profiling the genome-wide DNA methylation pattern of porcine ovaries using reduced representation bisulfite sequencing. Sci Rep. 2016;6:22138.
Article
CAS
PubMed
PubMed Central
Google Scholar
Lorincz MC, Dickerson DR, Schmitt M, Groudine M. Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells. Nat Struct Mol Biol. 2004;11(11):1068–75.
Article
CAS
PubMed
Google Scholar
Klose RJ, Bird AP. Genomic DNA methylation: the mark and its mediators. Trends Biochem Sci. 2006;31(2):89–97.
Article
CAS
PubMed
Google Scholar
Wang W, Zhang T, Wang J, Zhang G, Wang Y, Zhang Y, Zhang J, Li G, Xue Q, Han K, et al. Genome-wide association study of 8 carcass traits in Jinghai yellow chickens using specific-locus amplified fragment sequencing technology. Poult Sci. 2016;95(3):500–6.
Article
PubMed
Google Scholar
Wilson T, Wu XY, Juengel JL, Ross IK, Lumsden JM, Lord EA, Dodds KG, Walling GA, Mcewan JC, O'Connell AR. Highly prolific Booroola sheep have a mutation in the intracellular kinase domain of bone morphogenetic protein IB receptor (ALK-6) that is expressed in both oocytes and granulosa cells. Biol Reprod. 2001;64(4):1225–35.
Article
CAS
PubMed
Google Scholar
Mulsant P, Lecerf F, Fabre S, Schibler L, Monget P, Lanneluc I, Pisselet C, Riquet J, Monniaux D, Callebaut I. Mutation in bone morphogenetic protein receptor-IB is associated with increased ovulation rate in Booroola Mérino ewes. Proc Natl Acad Sci. 2001;98(9):5104.
Article
CAS
PubMed
PubMed Central
Google Scholar
Goyal S, Aggarwal J, Dubey PK, Mishra BP, Ghalsasi P, Nimbkar C, Joshi BK, Kataria RS. Expression analysis of genes associated with prolificacy in FecB carrier and noncarrier Indian sheep. Anim Biotechnol. 2017;28(3):220–7.
Article
CAS
PubMed
Google Scholar
Erickson GF, Shimasaki S. The spatiotemporal expression pattern of the bone morphogenetic protein family in rat ovary cell types during the estrous cycle. Reprod Biol Endocrinol. 2003;1(1):1–20.
Article
Google Scholar
Zhang H, Klausen C, Zhu H, Chang HM, Leung PC. BMP4 and BMP7 suppress StAR and progesterone production via ALK3 and SMAD1/5/8-SMAD4 in human Granulosa-Lutein cells. Endocrinology. 2015;156(11):en20151494.
Article
Google Scholar
George JW, Dille EA, Heckert LL. Current concepts of follicle-stimulating hormone receptor gene regulation. Biol Reprod. 2011;84(1):7–17.
Article
CAS
PubMed
Google Scholar
Law NC, Weck J, Kyriss B, Nilson JH. M H-D: Lhcgr expression in granulosa cells: roles for PKA-phosphorylated β-catenin, TCF3, and FOXO1. Mol Endocrinol. 2013;27(8):1295.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zhou Q, Wan M, Wei Q, Song Q, Xiong L, Huo J, Huang J. Expression, regulation, and functional characterization of FST gene in porcine Granulosa cells. Anim Biotechnol. 2016;27(4):295.
Article
CAS
PubMed
Google Scholar
Kimura F, Bonomi LM, Schneyer AL. Follistatin regulates germ cell Nest breakdown and primordial follicle formation. Endocrinology. 2011;152(2):697–706.
Article
CAS
PubMed
Google Scholar
Huang YZ, Zhan ZY, Sun YJ, Cao XK, Li MX, Wang J, Lan XY, Lei CZ, Zhang CL, Chen H. Intragenic DNA methylation status down-regulates bovine IGF2 gene expression in different developmental stages. Gene. 2014;534(2):356–61.
Article
CAS
PubMed
Google Scholar
Fan HY, O'Connor A, Shitanaka M, Shimada M, Liu Z, Richards JS. Beta-catenin (CTNNB1) promotes preovulatory follicular development but represses LH-mediated ovulation and luteinization. Mol Endocrinol. 2010;24(8):1529–42.
Article
CAS
PubMed
PubMed Central
Google Scholar
Chassot AA, Gillot I, Chaboissier MC. R-spondin1, WNT4, and the CTNNB1 signaling pathway: strict control over ovarian differentiation. Reproduction. 2014;148(6):R97–110.
Article
PubMed
Google Scholar
Fleming A. Membrane β-catenin and adherens junctions in early gonadal patterning. Dev Dyn. 2012;241(11):1782–98.
Article
CAS
PubMed
PubMed Central
Google Scholar
Estienne A, Lahoz B, Jarrier P, Bodin L, Folch J, Alabart JL, Fabre S, Monniaux D. BMP15 regulates the inhibin/activin system independently of ovulation rate control in sheep. Reproduction. 2017;153(4):395–404.
Article
CAS
PubMed
Google Scholar
Salerno EP, Bedognetti D, Mauldin IS, Deacon DH, Shea SM, Pinczewski J, Obeid JM, Coukos G, Wang E, Gajewski TF, et al. Human melanomas and ovarian cancers overexpressing mechanical barrier molecule genes lack immune signatures and have increased patient mortality risk. Oncoimmunology. 2016;5(12):e1240857.
Article
PubMed
PubMed Central
Google Scholar
Faleiro-Rodrigues C, Macedo-Pinto IM, Maia SS, Vieira RH, Lopes CS. Biological relevance of E-cadherin-catenin complex proteins in primary epithelial ovarian tumours. Gynecol Obstet Investig. 2005;60(2):75–83.
Article
CAS
Google Scholar
Faleiro-Rodrigues C, Macedo-Pinto I, Pereira D, Lopes CS. Loss of beta-catenin is associated with poor survival in ovarian carcinomas. Int J Gynecol Pathol. 2004;23(4):337–46.
Article
PubMed
Google Scholar
Ueda M, Gemmill RM, West J, Winn R, Sugita M, Tanaka N, Ueki M, Drabkin HA. Mutations of the beta- and gamma-catenin genes are uncommon in human lung, breast, kidney, cervical and ovarian carcinomas. Br J Cancer. 2001;85(1):64–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Davidson B, Berner A, Nesland JM, Risberg B, Berner HS, Trope CG, Kristensen GB, Bryne M, Ann Florenes V. E-cadherin and alpha-, beta-, and gamma-catenin protein expression is up-regulated in ovarian carcinoma cells in serous effusions. J Pathol. 2000;192(4):460–9.
Article
CAS
PubMed
Google Scholar