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Table 4 List of microarray features representing genes involved in cellular processes that were differentially expressed in the liver of Atlantic salmon fed diets with different proportions of marine and terrestrial ingredients

From: Changes in the liver transcriptome of farmed Atlantic salmon (Salmo salar) fed experimental diets based on terrestrial alternatives to fish meal and fish oil

Probe IDa

Best named BLASTx/BLASTn hit [species]b

Functional annotationc

ABP vs MARd

VEG vs MARd

VEG vs ABPd

Protein synthesis and degradation

 C152R057

Ribosomal protein L18a [S. salar]

P: translation

2.2

1.6

−1.3

 C027R084

Predicted: trypsin-2 [S. salar]

P: proteolysis

2.0

1.8

−1.1

 C097R072

Trypsin precursor [S. salar]

P: proteolysis

1.9

1.2

−1.6

 C172R121

60S ribosomal protein L7 [S. salar]

P: cytoplasmic translation; P: regulation of cell cycle

−1.8

− 1.4

1.3

 C005R140

60S acidic ribosomal protein P2 [S. salar]

P: translational elongation

1.9

2.4

1.2

Cell growth and proliferation

 C168R030

Serine/threonine-protein kinase Sgk2 ( sgk2a ) [ S. salar ]

P: regulation of cell growth; P: regulation of cell proliferation

−1.9

−1.1

1.8

 C050R117

Serine/threonine-protein kinase Sgk2 ( sgk2b ) [ S. salar ]

P: regulation of cell growth; P: regulation of cell proliferation

−1.8

−1.2

1.4

 C231R170

Predicted: serine protease HTRA1B isoform X1 ( htra1b ) [ S. salar ]

P: regulation of cell growth

−1.8

−2.2

−1.2

 C265R134

Predicted: serine protease HTRA1B isoform X2 ( htra1b ) [ S. salar ]

P: regulation of cell growth

−2.0

−2.1

−1.1

 C170R142

Predicted: serine protease HTRA1B isoform X1 ( htra1b ) [ S. salar ]

P: regulation of cell growth

−1.6

−1.8

− 1.1

 C035R053

Predicted: BicC family RNA binding protein 1, transcript variant X7 [S. salar]*

P: multicellular organism development

−1.4

− 1.6

−1.1

 C064R045

Predicted: PERQ amino acid-rich with GYF domain-containing protein 1-like [S. salar]

P: insulin-like growth factor receptor signaling pathway

1.8

1.1

−1.7

 C120R149

Predicted: protein regulator of cytokinesis 1-like isoform X1 [S. salar]

P: positive regulation of cell proliferation

2.0

1.5

−1.3

 C087R056

Pre-mRNA-splicing factor syf2 [S. salar]

P: positive regulation of cell proliferation

2.8

3.6

1.3

 C240R016

Predicted: cbp/p300-interacting transactivator 2-like [S. salar]

P: liver development; P:cell proliferation

−1.8

−1.4

1.2

Autophagy and apoptosis

 C241R134

Predicted: serine/threonine-protein kinase ULK4 [Esox lucius]

P: regulation of p38MAPK cascade

1.2

−1.8

−2.1

 C100R113

Growth arrest and DNA-damage-inducible protein GADD45 beta ( gadd45ba ) [ Oncorhynchus mykiss ]

P: positive regulation of apoptotic process

1.9

1.3

−1.5

 C263R103

Predicted: G0/G1 switch protein 2-like [S. salar]

P: positive regulation of extrinsic apoptotic signaling pathway

−1.8

−1.5

1.2

  1. a,b,c,dAll column constructions are as described in Table 3