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Table 2 The expression level of genes associated with buffalo reproduction traits identified by GWAS during four stages of buffalo follicle growth

From: Novel insights into the genetic basis of buffalo reproductive performance

Gene Length (bp) RPKM*
< 5 mm 5~ 8 mm 8~ 12 mm > 12 mm
IGFBP7 1107 723.49 840.17 965.37 883.67
NDUFS2 1601 215.46 254.71 317.72 322.20
TBCB 994 76.32 75.14 81.12 93.92
MTPN 2844 28.63 67.29 40.74 15.93
GMDS 1845 27.68 23.66 36.08 33.39
ZNF503 3514 21.09 20.43 25.47 15.84
LMO4 5219 15.44 31.11 35.43 23.79
GPATCH4 1830 10.96 8.31 8.36 9.72
KRR1 1258 7.67 20.06 9.86 4.39
MEF2D 5716 7.62 10.25 10.50 11.03
DIAPH3 4580 7.57 10.44 6.95 3.13
NUFIP2 3406 7.41 12.83 6.21 4.13
KYNU 2273 4.20 4.49 7.27 4.51
CSGALNACT1 # 3199 3.53a 0.87ab 0.42b 0.37b
IQGAP3 5860 3.51 4.93 3.85 1.71
PRDM5 6373 3.38 3.92 2.40 1.66
PELI2 5697 3.23 3.79 3.61 1.42
SESN3 7235 2.14 5.73 2.46 1.42
THRB 6346 1.89 1.65 2.55 2.12
CADM2 3342 0.03 0.17 0.04
FSTL4 8110 0.03 0.03 0.07 0.12
KCNMA1 2401 0.03 0.06
COL23A1 2333 0.04 0.03
SOX21 3417 0.02
CDH10 3174 0.09 0.07
  1. *RPKM Reads per kb per million reads. #CSGALNACT1: significanty differentially expressed gene (FDR < 0.05). The different superscript letters showed significant level