Fig. 7
From: Identification and characterization of novel conserved RNA structures in Drosophila
Examples of CMfinder predictions that are part of putative novel transcripts or possibly incomplete annotations. Example a with a particularly high co-expression score and small distance to the closest annotated gene could be part of an incompletely annotated UTR. Example b is located much further from the closest annotated gene and hence could be part of a putative novel independent transcript. Example c is located in a differentially expressed intron of a gene of which no exons are expressed in the same developmental stage. For more details see description in the main text. Alignment and secondary structure visualization were performed using RNAalifold [79, 80]