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Table 1 Annotation of total clean reads from samples (mean counts) representing each of three KHV infection phases

From: Host microRNA analysis in cyprinid Herpesvirus-3 (CyHV-3) infected common carp

  Phase P1 (mean counts) Phase P2 (mean counts) Phase P3 (mean counts)
Raw reads 10,026,145 10,011,267 10,102,972
Clean reads 9,575,634 9,627,773 9,688,795
miRNA 8,308,461 7,858,105 8,474,366
pre-miRNA 400,781 425,229 420,086
tRNAs 124,225 223,161 100,263
rRNAs 83,870 135,885 60,105
mRNAs 148,946 233,832 136,264
repeats 11,664 9765 4616
snRNAs 5564 4722 3005
snoRNAs 22,981 18,904 15,896
lncRNA 3145 6176 3405
mitochondrion 1464 2224 2255
pseudogene 655 1092 580
Introns 42,078 34,257 37,516
Potential KHV sequence 0 4 0
Unannotated 398,478 645,125 408,956
Discarded 23,322 29,292 21,482