Table 1 Annotation of total clean reads from samples (mean counts) representing each of three KHV infection phases
From: Host microRNA analysis in cyprinid Herpesvirus-3 (CyHV-3) infected common carp
| Â | Phase P1 (mean counts) | Phase P2 (mean counts) | Phase P3 (mean counts) |
|---|---|---|---|
Raw reads | 10,026,145 | 10,011,267 | 10,102,972 |
Clean reads | 9,575,634 | 9,627,773 | 9,688,795 |
miRNA | 8,308,461 | 7,858,105 | 8,474,366 |
pre-miRNA | 400,781 | 425,229 | 420,086 |
tRNAs | 124,225 | 223,161 | 100,263 |
rRNAs | 83,870 | 135,885 | 60,105 |
mRNAs | 148,946 | 233,832 | 136,264 |
repeats | 11,664 | 9765 | 4616 |
snRNAs | 5564 | 4722 | 3005 |
snoRNAs | 22,981 | 18,904 | 15,896 |
lncRNA | 3145 | 6176 | 3405 |
mitochondrion | 1464 | 2224 | 2255 |
pseudogene | 655 | 1092 | 580 |
Introns | 42,078 | 34,257 | 37,516 |
Potential KHV sequence | 0 | 4 | 0 |
Unannotated | 398,478 | 645,125 | 408,956 |
Discarded | 23,322 | 29,292 | 21,482 |