Table 3 Effects of SNPs and short indels identified in Sri Lankan L. donovani isolates on coding regions
From: Genomic insights into virulence mechanisms of Leishmania donovani: evidence from an atypical strain
Variant type | Common to VL & CL | Unique to CL | Unique to VL |
|---|---|---|---|
Frame shift | 52 | 15 | 31 |
Stop gained | 21 | 3 | 7 |
Stop lost | 8 | 2 | 4 |
Start lost | 2 | 2 | 1 |
Stop retained | 13 | 3 | 3 |
Non synonymous coding | 12,046 | 1576 | 2804 |
Synonymous coding | 12,181 | 1558 | 2507 |
Initiator codon variant | 1 | – | – |
Disruptive inframe deletion | 30 | 4 | 3 |
Disruptive inframe insertion | 35 | 4 | 10 |