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Table 1 List of strains used in this study

From: Comparative genomics and pathogenicity potential of members of the Pseudomonas syringae species complex on Prunus spp

Straina

Code

Origin

Sourceb

Host

GenBank

Acc. Nr.c

Reference

PG

P. syringae pv. actinidiae ICMP 18884

Psa ICMP 18884

NZ, 2010

J. Vanneste

kiwifruit

CP011972.1

[98]

PG1b

P. syringae pv. actinidiae CRAFRU8.43

Psa CRAFRU8.43

IT, 2008

M. Scortichini

kiwifruit

AFTG01

[99]

PG1b

P. syringae pv. actinidiae ICMP 18886

Psa ICMP 18886

NZ, 2010

J. Vanneste

kiwifruit

AOJT01

[100]

PG1b

P. syringae pv. actinidiae ICMP 9617P

Psa ICMP 9617P

JP, 1984

M. Scortichini

kiwifruit

AFTH01

[101]

PG1b

P. syringae pv. actinidiae ICMP 19103

Psa ICMP 19103

JP, 1987

J. Vanneste

kiwifruit

AOJQ01

[100]

PG1b

P. syringae pv. actinidiae ICMP 19073

Psa CMP 19073

KR, 1998

J. Vanneste

kiwifruit

AOJR01

[100]

PG1b

P. syringae pv. theae ICMP 3923

Pth ICMP 3923

JP, 1970

CFBP

tea

LJRU01

N.A.

PG1b

P. syringae pv. actinidifoliorum ICMP 18883

Pfm ICMP 18883

NZ, 2010

J. Vanneste

kiwifruit

AOKH01

[100]

PG1b

P. syringae pv. morsprunorum race 2 CFBP 3800

Pmp2 CFBP 3800

UK, N.A.

CFBP

sour cherry

OLMQ01000001-OLMQ01000003;

LT985190-LT985191PB

This work

PG1b

P. amygdali pv. morsprunorum race 2 M302280P

Pmp2 MAFF 302280

US, N.A.

J. Dangl

plum

AEAE01

[40]

PG1b

P. syringae pv. morsprunorum race 2 CFBP 6411

Pmp2 CFBP 6411

UK, 1995

CFBP

sweet cherry

LT963408PB

This work

PG1b

P. avellanae BPIC 631T

Pav BPCI631

GR, 1976

C. Morris

hazelnut

AKBS01

[102]

PG1b

P. avellanae PaVt10

Pav PaVt10

IT, 2010

C. Morris

hazelnut

JYHC01

[103]

PG1b

P. syringae USA007

USA007

US, 2007

C. Morris

stream water

AVDY02

[104]

PG1b

P. syringae CC1559

CC1559

FR, 2006

C. Morris

snow

AVEG02

[104]

PG1b

P. syringae pv. viburni ICMP 3963P

Pvi ICMP 3963

US, N.A.

CFBP

Viburnum sp.

LJRR01

N.A.

PG1b

P. amygdali pv. lachrymans M302278

Pla M302278

US, 1935

J. Dangl

cucumber

AEAM01

[40]

PG1a

P. syringae pv. maculicola CFBP 1657P

Pma CFBP1657

NZ, 1965

CFBP

cauliflower

JYHH01

[103]

PG1a

P. syringae pv. tomato DC3000

Pto DC3000

UK, 1960

J. Stavrinides

tomato

AE016853.1

[105]

PG1a

P. syringae CC1630

CC1630

US, 2007

C. Morris

onobrychis

AVED02

[104]

PG1a

P. syringae pv. tomato NCPPB 1108

Pto NCPPB 1108

UK, 1960

NCPPB

tomato

ADGA01

N.A.

PG1a

P. syringae pv. avii CFBP 3846P

Pavii CFBP 3846

FR, 1991

CFBP

sweet cherry

LT963402-LT963407PB

This work

PG1a

P. syringae pv. persicae CFBP 1573P

Ppe CFBP 1573

FR, 1974

CFBP

peach

ODAL01000001-ODAL01000214MS

This work

PG1a

P. syringae pv. persicae NCPPB 2254

Ppe NCPPB 2254

FR, 1969

NCPPB

peach

ODAM01000001-ODAM01000246 MS

This work

PG1a

P. syringae pv. syringae CFBP 2118

Psy CFBP 2118

FR, 1979

CFBP

sour cherry

LT962481PB

This work

PG2d

P. syringae pv. syringae B728a

Psy B728a

US, 1987

J. Stavrinides

bean

CP000075.1

[106]

PG2d

P. syringae pv. syringae CFBP 4215

Psy CFBP 4215

FR. 1997

CFBP

sweet cherry

LT962480PB

This work

PG2d

P. syringae CC94

CC94

FR, 1997

C. Morris

cantaloupe

AVEA02

[104]

PG2d

P. syringae USA011

USA011

US, 2007

C. Morris

stream water

AVDX02

[104]

PG2d

P. syringae CC1543

CC1543

FR, 2006

C. Morris

lake water

AVEJ02

[104]

PG2b

P. syringae pv. avellanae ISPAVE013

Psav ISPAVE013

IT, 1992

D. Guttman

hazelnut

AKCJ01

[102]

PG2b

P. syringae BRIP39023

BRIP39023

AU, 1971

R. Shivas

barley

AMZX01

[107]

PG2a

P. syringae pv. papulans ICMP 4048P

Ppp ICMP 4048

CN, 1973

CFBP

apple

LJRB01

N.A.

PG2a

P. cerasi PL963

P.cerasi PL963

PL, 2007

M. Kałużna

sweet cherry

LT222313-LT222319 PB

This work

PG2a

P. cerasi PL58T

P.cerasi PL58

PL, 2007

M. Kałużna

sour cherry

LT222313-LT222319PB

[46]

PG2a

P. syringae pv. tagetis ICMP 4091P

Ptg ICMP4091

ZW, 1972

CFBP

mexican marigold

LJRM01

N.A.

PG6

P. syringae pv. morsprunorum race 1 CFBP 3840

Pmp1 CFBP 3840

FR, 1996

CFBP

sweet cherry

LT963409-LT963413PB

This work

PG3

P. syringae pv. morsprunorum race 1 CFBP 2116

Pmp1 CFBP 2116

FR, 1974

CFBP

sour cherry

LT985192-LT985195;

OLMD01000001-OLMD01000002PB

This work

PG3

P. amygdali pv. dendropanacis CFBP 3226P

Pde CFBP 3226

JP, 1979

CFBP

dendropanax trifidus

JYHG01

[103]

PG3

P. amygdali CFBP 3205T

P.amygdali CFBP 3205

GR, 1967

CFBP

almond

JYHB01

[103]

PG3

P. savastanoi pv. savastanoi DAPP-PG722

Psv DAPP-PG722

IT, 2007

C. Moretti

olive

JOJV01

[108]

PG3

P. syringae pv. cerasicola CFBP 6110

Pscer CFBP 6110

JP, 1995

CFBP

ornamental-cherry

OLMP01000001-OLMP01000002;

LT985210-LT985212PB

This work

PG3

P. syringae pv. cerasicola CFBP 6109P

Pscer CFBP 6109

JP, 1995

CFBP

ornamental-cherry

LT963391-LT963394PB

This work

PG3

P. amygdali pv. aesculi 0893_23

Pae 0893_23

IN, 1969

J. Dangl

horse chestnut

AEAD01

[40]

PG3

P. syringae pv. phaseolicola 1448a

Pph 1448a

ET, 1985

CFBP

bean

CP000058.1

[109]

PG3

P. syringae CC1557

CC1557

FR, 2006

C. Morris

snow

CP007014.1

N.A.

PG10b

P. syringae CC1583

CC1583

FR, 2006

C. Morris

epilithon

AVEF02

[104]

PG10a

P. cannabina pv. alisalensis ES4326

Pal ES4326

US, 1965

J. Dangl

radish

AEAK01

[40]

PG5

P. syringae CC1513

CC1513

FR, 2006

C. Morris

Hutchinsia alpina

AVEL02

[104]

PG4

P. syringae CC1629

CC1629

US, 2007

C. Morris

oats

AVEE02

[104]

PG4

P. syringae CC1524

CC1524

FR, 2006

C. Morris

stream water

AVEK02

[104]

PG9

P. viridiflava CFBP 1590

Pvir CFBP 1590

FR, 1974

CFBP

sour cherry

LT855380

[78]

PG7

  1. N.A. not available
  2. aSuperscript following strain names indicate T the type strain of a species and P the pathotype strain for a pathovar. Culture collections providing strains are abbreviated in the strain names as ATCC (American Type Culture Collection, Manassas, Virginia, USA), CFBP (Collection Française de Bactéries associées aux Plantes, FR), DSM (German Collection of Microorganisms and Cell Cultures, DE), ICMP (International Collection of Microorganisms from Plants, NZ), LMG (Bacteria collection of the Laboratory for Microbiology of the Faculty of Sciences of the Ghent University, BE), NCPPB (National Collection of Plant Pathogenic Bacteria, UK) and MAFF (NIAS Genebank of the Ministry of Agriculture, Forestry and Fisheries, JP)
  3. bStrain obtained from Dr. Jeff Dangl (The University of North Carolina, Chapel Hill, US), Prof. Dr. David Guttman (University of Toronto, CA), Dr. Monika Kałużna and Dr. Joanna Puławska (Research Institute of Horticulture, Skierniewice, PL), Dr. Cindy E. Morris (Institut National de la Recherche Agronomique, Montfavet, FR), Dr. Marco Scortichini (Research Centre for Fruit Trees, Rome, IT), Dr. Roger G. Shivas and Yu Pei Tan (Department of Agriculture, Fisheries, and Forestry, Brisbane, AU), Dr. John Stavrinides (University of Regina, Saskatchewan, CA), Dr. Joel Vanneste (Plant and Food Research, Hamilton, NZ), CFBP (Collection Française de Bactéries associées aux Plantes, FR) or NCPPB (National Collection of Plant Pathogenic Bacteria, UK)
  4. cFor Whole Genome Sequence (WGS) accession numbers are provided as four letters prefixes and two digits for the version number of the data set. Superscript PB and MS following accession numbers indicate strains sequenced in this study using PacBio or MiSeq, respectively
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BMC Genomics

ISSN: 1471-2164

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