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Table 1 List of strains used in this study

From: Comparative genomics and pathogenicity potential of members of the Pseudomonas syringae species complex on Prunus spp

Straina Code Origin Sourceb Host GenBank
Acc. Nr.c
Reference PG
P. syringae pv. actinidiae ICMP 18884 Psa ICMP 18884 NZ, 2010 J. Vanneste kiwifruit CP011972.1 [98] PG1b
P. syringae pv. actinidiae CRAFRU8.43 Psa CRAFRU8.43 IT, 2008 M. Scortichini kiwifruit AFTG01 [99] PG1b
P. syringae pv. actinidiae ICMP 18886 Psa ICMP 18886 NZ, 2010 J. Vanneste kiwifruit AOJT01 [100] PG1b
P. syringae pv. actinidiae ICMP 9617P Psa ICMP 9617P JP, 1984 M. Scortichini kiwifruit AFTH01 [101] PG1b
P. syringae pv. actinidiae ICMP 19103 Psa ICMP 19103 JP, 1987 J. Vanneste kiwifruit AOJQ01 [100] PG1b
P. syringae pv. actinidiae ICMP 19073 Psa CMP 19073 KR, 1998 J. Vanneste kiwifruit AOJR01 [100] PG1b
P. syringae pv. theae ICMP 3923 Pth ICMP 3923 JP, 1970 CFBP tea LJRU01 N.A. PG1b
P. syringae pv. actinidifoliorum ICMP 18883 Pfm ICMP 18883 NZ, 2010 J. Vanneste kiwifruit AOKH01 [100] PG1b
P. syringae pv. morsprunorum race 2 CFBP 3800 Pmp2 CFBP 3800 UK, N.A. CFBP sour cherry OLMQ01000001-OLMQ01000003;
LT985190-LT985191PB
This work PG1b
P. amygdali pv. morsprunorum race 2 M302280P Pmp2 MAFF 302280 US, N.A. J. Dangl plum AEAE01 [40] PG1b
P. syringae pv. morsprunorum race 2 CFBP 6411 Pmp2 CFBP 6411 UK, 1995 CFBP sweet cherry LT963408PB This work PG1b
P. avellanae BPIC 631T Pav BPCI631 GR, 1976 C. Morris hazelnut AKBS01 [102] PG1b
P. avellanae PaVt10 Pav PaVt10 IT, 2010 C. Morris hazelnut JYHC01 [103] PG1b
P. syringae USA007 USA007 US, 2007 C. Morris stream water AVDY02 [104] PG1b
P. syringae CC1559 CC1559 FR, 2006 C. Morris snow AVEG02 [104] PG1b
P. syringae pv. viburni ICMP 3963P Pvi ICMP 3963 US, N.A. CFBP Viburnum sp. LJRR01 N.A. PG1b
P. amygdali pv. lachrymans M302278 Pla M302278 US, 1935 J. Dangl cucumber AEAM01 [40] PG1a
P. syringae pv. maculicola CFBP 1657P Pma CFBP1657 NZ, 1965 CFBP cauliflower JYHH01 [103] PG1a
P. syringae pv. tomato DC3000 Pto DC3000 UK, 1960 J. Stavrinides tomato AE016853.1 [105] PG1a
P. syringae CC1630 CC1630 US, 2007 C. Morris onobrychis AVED02 [104] PG1a
P. syringae pv. tomato NCPPB 1108 Pto NCPPB 1108 UK, 1960 NCPPB tomato ADGA01 N.A. PG1a
P. syringae pv. avii CFBP 3846P Pavii CFBP 3846 FR, 1991 CFBP sweet cherry LT963402-LT963407PB This work PG1a
P. syringae pv. persicae CFBP 1573P Ppe CFBP 1573 FR, 1974 CFBP peach ODAL01000001-ODAL01000214MS This work PG1a
P. syringae pv. persicae NCPPB 2254 Ppe NCPPB 2254 FR, 1969 NCPPB peach ODAM01000001-ODAM01000246 MS This work PG1a
P. syringae pv. syringae CFBP 2118 Psy CFBP 2118 FR, 1979 CFBP sour cherry LT962481PB This work PG2d
P. syringae pv. syringae B728a Psy B728a US, 1987 J. Stavrinides bean CP000075.1 [106] PG2d
P. syringae pv. syringae CFBP 4215 Psy CFBP 4215 FR. 1997 CFBP sweet cherry LT962480PB This work PG2d
P. syringae CC94 CC94 FR, 1997 C. Morris cantaloupe AVEA02 [104] PG2d
P. syringae USA011 USA011 US, 2007 C. Morris stream water AVDX02 [104] PG2d
P. syringae CC1543 CC1543 FR, 2006 C. Morris lake water AVEJ02 [104] PG2b
P. syringae pv. avellanae ISPAVE013 Psav ISPAVE013 IT, 1992 D. Guttman hazelnut AKCJ01 [102] PG2b
P. syringae BRIP39023 BRIP39023 AU, 1971 R. Shivas barley AMZX01 [107] PG2a
P. syringae pv. papulans ICMP 4048P Ppp ICMP 4048 CN, 1973 CFBP apple LJRB01 N.A. PG2a
P. cerasi PL963 P.cerasi PL963 PL, 2007 M. Kałużna sweet cherry LT222313-LT222319 PB This work PG2a
P. cerasi PL58T P.cerasi PL58 PL, 2007 M. Kałużna sour cherry LT222313-LT222319PB [46] PG2a
P. syringae pv. tagetis ICMP 4091P Ptg ICMP4091 ZW, 1972 CFBP mexican marigold LJRM01 N.A. PG6
P. syringae pv. morsprunorum race 1 CFBP 3840 Pmp1 CFBP 3840 FR, 1996 CFBP sweet cherry LT963409-LT963413PB This work PG3
P. syringae pv. morsprunorum race 1 CFBP 2116 Pmp1 CFBP 2116 FR, 1974 CFBP sour cherry LT985192-LT985195;
OLMD01000001-OLMD01000002PB
This work PG3
P. amygdali pv. dendropanacis CFBP 3226P Pde CFBP 3226 JP, 1979 CFBP dendropanax trifidus JYHG01 [103] PG3
P. amygdali CFBP 3205T P.amygdali CFBP 3205 GR, 1967 CFBP almond JYHB01 [103] PG3
P. savastanoi pv. savastanoi DAPP-PG722 Psv DAPP-PG722 IT, 2007 C. Moretti olive JOJV01 [108] PG3
P. syringae pv. cerasicola CFBP 6110 Pscer CFBP 6110 JP, 1995 CFBP ornamental-cherry OLMP01000001-OLMP01000002;
LT985210-LT985212PB
This work PG3
P. syringae pv. cerasicola CFBP 6109P Pscer CFBP 6109 JP, 1995 CFBP ornamental-cherry LT963391-LT963394PB This work PG3
P. amygdali pv. aesculi 0893_23 Pae 0893_23 IN, 1969 J. Dangl horse chestnut AEAD01 [40] PG3
P. syringae pv. phaseolicola 1448a Pph 1448a ET, 1985 CFBP bean CP000058.1 [109] PG3
P. syringae CC1557 CC1557 FR, 2006 C. Morris snow CP007014.1 N.A. PG10b
P. syringae CC1583 CC1583 FR, 2006 C. Morris epilithon AVEF02 [104] PG10a
P. cannabina pv. alisalensis ES4326 Pal ES4326 US, 1965 J. Dangl radish AEAK01 [40] PG5
P. syringae CC1513 CC1513 FR, 2006 C. Morris Hutchinsia alpina AVEL02 [104] PG4
P. syringae CC1629 CC1629 US, 2007 C. Morris oats AVEE02 [104] PG4
P. syringae CC1524 CC1524 FR, 2006 C. Morris stream water AVEK02 [104] PG9
P. viridiflava CFBP 1590 Pvir CFBP 1590 FR, 1974 CFBP sour cherry LT855380 [78] PG7
  1. N.A. not available
  2. aSuperscript following strain names indicate T the type strain of a species and P the pathotype strain for a pathovar. Culture collections providing strains are abbreviated in the strain names as ATCC (American Type Culture Collection, Manassas, Virginia, USA), CFBP (Collection Française de Bactéries associées aux Plantes, FR), DSM (German Collection of Microorganisms and Cell Cultures, DE), ICMP (International Collection of Microorganisms from Plants, NZ), LMG (Bacteria collection of the Laboratory for Microbiology of the Faculty of Sciences of the Ghent University, BE), NCPPB (National Collection of Plant Pathogenic Bacteria, UK) and MAFF (NIAS Genebank of the Ministry of Agriculture, Forestry and Fisheries, JP)
  3. bStrain obtained from Dr. Jeff Dangl (The University of North Carolina, Chapel Hill, US), Prof. Dr. David Guttman (University of Toronto, CA), Dr. Monika Kałużna and Dr. Joanna Puławska (Research Institute of Horticulture, Skierniewice, PL), Dr. Cindy E. Morris (Institut National de la Recherche Agronomique, Montfavet, FR), Dr. Marco Scortichini (Research Centre for Fruit Trees, Rome, IT), Dr. Roger G. Shivas and Yu Pei Tan (Department of Agriculture, Fisheries, and Forestry, Brisbane, AU), Dr. John Stavrinides (University of Regina, Saskatchewan, CA), Dr. Joel Vanneste (Plant and Food Research, Hamilton, NZ), CFBP (Collection Française de Bactéries associées aux Plantes, FR) or NCPPB (National Collection of Plant Pathogenic Bacteria, UK)
  4. cFor Whole Genome Sequence (WGS) accession numbers are provided as four letters prefixes and two digits for the version number of the data set. Superscript PB and MS following accession numbers indicate strains sequenced in this study using PacBio or MiSeq, respectively