Table 1 Linkage group wise distribution and summary on SNPs used for genetic map construction
Linkage groups | SNPs on Axiom Cajanus SNP Array | Data generated | SNPs polymorphic in/for parents | Homozygous polymorphic SNPs | SNPs used for constructing genetic map | SNPs mapped | % Mapped | Length (cM) | Average marker interval (cM) | SNPs/cM |
|---|---|---|---|---|---|---|---|---|---|---|
CcLG01 | 4638 | 4585 | 861 | 629 | 629 | 577 | 91.7 | 39 | 0.1 | 14.9 |
CcLG02 | 8506 | 8425 | 1311 | 1045 | 1043 | 882 | 84.6 | 146 | 0.2 | 6.0 |
CcLG03 | 5869 | 5773 | 1250 | 945 | 944 | 493 | 52.2 | 98 | 0.2 | 5.0 |
CcLG04 | 4134 | 4093 | 830 | 627 | 627 | 608 | 97.0 | 59 | 0.1 | 10.3 |
CcLG05 | 922 | 904 | 335 | 251 | 251 | 248 | 98.8 | 34 | 0.1 | 7.3 |
CcLG06 | 4784 | 4693 | 943 | 750 | 747 | 659 | 88.2 | 53 | 0.1 | 12.4 |
CcLG07 | 4321 | 4269 | 813 | 632 | 629 | 526 | 83.6 | 130 | 0.2 | 4.0 |
CcLG08 | 5178 | 5099 | 1093 | 793 | 791 | 759 | 96.0 | 167 | 0.2 | 4.5 |
CcLG09 | 3615 | 3578 | 780 | 527 | 527 | 350 | 66.4 | 39 | 0.1 | 9.1 |
CcLG10 | 5928 | 5834 | 1192 | 742 | 742 | 458 | 61.7 | 56 | 0.1 | 8.1 |
CcLG11 | 8617 | 8495 | 2070 | 1707 | 1704 | 1258 | 73.8 | 153 | 0.1 | 8.2 |
Total/ across genome | 56,512 | 55,748 | 11,478 | 8648 | 8634 | 6818 | 79.0 | 974 | 0.1 | 7.0 |