Joshi PK, Rao PP. Global pulses scenario: status and outlook. Ann N Y Acad Sci. 2017;1392:6–17.
Article
CAS
Google Scholar
FAOSTAT (2018) FAOSTAT Database. Available online at: http://www.fao.org/faostat/en/#data/QC.
Google Scholar
Saxena KB, Tikle AN, Kumar RV, Choudhary AK, Bahadur B. Nectarivore-aided hybridization and its exploitation for productivity enhancement in pigeonpea. Int J Sci Res Pub. 2016;06:321–31.
Google Scholar
Saxena KB, Kumar RV, Srivastava N, Shiying B. A cytoplasmic-nuclear male-sterility system derived from a cross between Cajanus cajanifolius and Cajanus cajan. Euphytica. 2005;145:289–94.
Article
Google Scholar
Gupta SC, Reddy LJ, Sharma D, Green JM, Murthy AN, Saxena KB. Maintenance of pigeonpea cultivars. Proc Intl Workshop Pigeonpeas 15–19 Dec, 1980. ICRISAT 1981;1:295–302.
Njung'e V, Deshpande S, Siambi M, Jones R, Silim S, Villiers SD. SSR genetic diversity assessment of popular pigeonpea varieties in Malawi reveals unique fingerprints. Electron J Biotechnol. 2016;21:65–71.
Article
CAS
Google Scholar
Saxena KB, Ariyanayagam RP, Reddy LJ. Genetics of a high-selfing trait in pigeonpea. Euphytica. 1992;59:125–7.
Article
Google Scholar
Saxena KB, Jayasekera SJBA, Ariyaratne HP, Ariyanayagam RP, Fonseka HHD. Frequency of natural out-crossing in partially cleistogamous pigeonpea lines in diverse environments. Crop Sci. 1994;34:660–2.
Article
Google Scholar
Saxena RK, Prathima C, Saxena KB, Hoisington DA, Singh NK, Varshney RK. Novel SSR markers for polymorphism detection in pigeonpea (Cajanus spp.). Plant Breed. 2010;129:142–8.
Article
CAS
Google Scholar
Bohra A, Dubey A, Saxena RK, Penmetsa RV, Poornima KN, Kumar N, Farmer AD, Srivani G, Upadhyaya HD, Gothalwal R, et al. Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biol. 2011;11:56.
Article
CAS
Google Scholar
Bohra A, Jha R, Pandey G, Patil PG, Saxena RK, Singh IP, Singh D, Mishra RK, Mishra A, Singh F, et al. New hypervariable SSR markers for diversity analysis, hybrid purity testing and trait mapping in pigeonpea (Cajanus cajan (L.) Millspaugh). Front Plant Sci. 2017;8:377.
Article
Google Scholar
Dutta S, Kumawat G, Singh BP, Gupta DK, Singh S, Dogra V, Gaikwad K, Sharma TR, Raje RS, Bandhopadhya TK, et al. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biol. 2011;11:17.
Article
CAS
Google Scholar
Saxena RK, Penmetsa RV, Upadhyaya HD, Kumar A, Carrasquilla-Garcia N, Schlueter JA, Farmer A, Whaley AM, Sarma BK, May GD, et al. Large-scale development of cost-effective SNP marker assays for genetic mapping in pigeonpea and comparative mapping in legumes. DNA Res. 2012;19:449–61.
Article
CAS
Google Scholar
Saxena RK, Von Wettberg E, Upadhyaya HD, Sanchez V, Songok S, Saxena KB, Kimurto P, Varshney RK. Genetic diversity and demographic history of Cajanus spp. illustrated from genome-wide SNPs. PLoS One. 2014;9:e88568.
Article
Google Scholar
Roorkiwal M, Sawargaonkar SL, Chitikineni A, Thudi M, Saxena RK, Upadhyaya HD, Vales MI, Riera-Lizarazu O, Varshney RK, et al. Single nucleotide polymorphism genotyping for breeding and genetics applications in chickpea and pigeonpea using the BeadXpress platform. Plant Genom. 2013;6:1–10.
Article
CAS
Google Scholar
Gnanesh BN, Bohra A, Sharma M, Byregowda M, Pande S, Wesley V, Saxena RK, Saxena KB, Kavi Kishor PB, Varshney RK. Genetic mapping and quantitative trait locus analysis of resistance to sterility mosaic disease in pigeonpea [Cajanus cajan (L.) Millsp.]. Field Crop Res. 2011;123:53–61.
Article
Google Scholar
Bohra A, Saxena RK, Gnanesh BN, Saxena KB, Byregowda M, Rathore A, Kavi Kishor PB, Cook DR, Varshney RK. An intra-specific consensus genetic map of pigeonpea (Cajanus cajan (L) Millsp) derived from six mapping populations. Theor Appl Genet. 2012;125:1325–38.
Article
Google Scholar
Dubey A, Farmer A, Schlueter J, Cannon SB, Abernathy B, Tuteja R, Woodward J, Shah T, Mulasmanovic B, Kudapa H, et al. Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.). DNA Res. 2011;18:153–64.
Article
CAS
Google Scholar
Kudapa H, Bharti AK, Cannon SB, Farmer AD, Mulaosmanovic B, Kramer R, Bohra A, Weeks NT, Crow JA, Tuteja R, et al. A comprehensive transcriptome assembly of pigeonpea (Cajanaus cajan L.) using sanger and second-generation sequencing platforms. Mol Plant. 2012;5:1020–8.
Article
CAS
Google Scholar
Pazhamala LT, Purohit S, Saxena RK, Garg V, Krishnamurthy L, Verdier J, Varshney RK. Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation. J Exp Bot. 2017;68:2037–54.
Article
CAS
Google Scholar
Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MTA, Azam S, Fan G, Whaley AM, et al. Draft genome sequence of pigeonpea [Cajanus cajan (L.) Millsp.] an orphan legume crop of resource poor farmers. Nat Biotechnol. 2012;30:83–9.
Article
CAS
Google Scholar
Kumar V, Khan AW, Saxena RK, Garg V, Varshney RK. First-generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations. Plant Biotechnol J. 2016;14:1673–81.
Article
CAS
Google Scholar
Varshney RK, Saxena RK, Upadhyaya HD, Khan AW, Yu Y, Kim C, Rathore A, Kim D, Kim J, An S, et al. Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nat Genet. 2017;49:1082–8.
Article
CAS
Google Scholar
Singh VK, Khan AW, Saxena RK, Kumar V, Kale SM, Sinha P, Chitikineni A, Pazhamala LT, Garg V, Sharma M, et al. Next-generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea (Cajanus cajan). Plant Biotechnol J. 2016;14:1183–94.
Article
CAS
Google Scholar
Saxena RK, Singh VK, Kale SM, Tathineni R, Parupalli S, Kumar V, Garg V, Das RR, Sharma M, Yamini KN, et al. Construction of genotyping by sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea. Sci Rep. 2017;7:1911.
Article
Google Scholar
Saxena RK, Kale SM, Kumar V, Parupali S, Joshi S, Singh V, Garg V, Das RR, Sharma M, Yamini KN, et al. Genotyping-by-sequencing of three mapping populations for identification of candidate genomic regions for resistance to sterility mosaic disease in pigeonpea. Sci Rep. 2017;7:1813.
Article
Google Scholar
Saxena RK, Obala J, Sinjushin A, Sameer Kumar CV, Saxena KB, Varshney RK. Characterization and mapping of Dt1 locus which co-segregates with CcTFL1 for growth habit in pigeonpea. Theor Appl Genet. 2017;130:1773–84.
Article
CAS
Google Scholar
Saxena RK, Rathore A, Bohra A, Yadav P, Das RR, Khan AW, Singh VK, Chitikineni A, Singh IP, Sameer Kumar CV, et al. Development and application of high density axiom Cajanus SNP Array with 56K SNPs to understand the genome architecture of released cultivars and founder genotypes for redefining future pigeonpea breeding programs. Plant genom. 2018;1:1–10.
Saxena KB, Singh L, Ariyanagam RP. Role of partial cleistogamy in maintaining genetic purity of pigeonpea. Euphytica. 1993;66:225–9.
Article
Google Scholar
Chhabra AK, Sethi SK. Inheritance of cleistogamic flowering in durum wheat (Triticum durum). Euphytica. 1991;55:147–50.
Article
Google Scholar
Nagao S, Takahashi M. Trial construction of twelve linkage groups in Japanese rice. J Fac Agric. 1963;53:72–130.
Google Scholar
Takahashi R, Kurosaki H, Yumoto S, Han OK, Abe J. Genetic linkage analysis of cleistogamy in soybean. J Hered. 2001;92:89–92.
Article
CAS
Google Scholar
Turuspekov Y, Mano Y, Honda I, Kawada N, Watanabe Y, Komatsuda T. Identification and mapping of cleistogamy genes in barley. Theor Appl Genet. 2004;109:480–7.
Article
CAS
Google Scholar
Kumawat G, Raje RS, Bhutani S, Pal JK, Mithra AS, Gaikwad K, Sharma TR, Singh NK. Molecular mapping of QTLs for plant type and earliness traits in pigeonpea (Cajanus cajan L. Millsp.). BMC Genet. 2012;13:84.
Article
Google Scholar
Arora S, Mahato AK, Singh S, Mandal P, Bhutani S, Dutta S, Kumawat G, Singh BP, Chaudhary AK, Yadav R, et al. A high-density intraspecific SNP linkage map of pigeonpea (Cajanas cajan L. Millsp.). PLoS One. 2017;12:e0179747.
Article
Google Scholar
Obala J, Saxena RK, Singh V, Sameer Kumar CV, Saxena KB, Tongoona P, Sibiya J, Varshney RK. Development of sequence-based markers for seed protein content in pigeonpea. Mol Gen Genomics. 2018. https://doi.org/10.1007/s00438-018-1484-8.
Li H, Ribaut JM, Li Z, Wang J. Inclusive composite interval mapping (ICIM) for digenic epistasis of quantitative traits in biparental populations. Theor Appl Genet. 2008;116:243–60.
Article
Google Scholar
Wang J, Li H, Zhang L, Meng L. Users’ manual of QTL IciMapping. 2014. http://www.isbreeding.net/software/?type=detail&id=18.
Meng L, Li H, Zhang L, Wang J. QTL IciMapping: integrated software for genetic linkage map construction and quantitative trait locus mapping in biparental populations. Crop J. 2015;3:269–83.
Article
Google Scholar
Kosambi DD. The estimation of map distances from recombination values. Ann Eugenics. 1944;12:172–5.
Article
Google Scholar
Wang Z, Cheng J, Chen Z, Huang J, Bao Y, Wang J, Zhang H. Identification of QTLs with main, epistatic and QTL 9 environment interaction effects for salt tolerance in rice seedlings under different salinity conditions. Theor Appl Genet. 2012;125:807–15.
Article
CAS
Google Scholar