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Table 2 QTLs identified for target traits in RILs developed from ICPL 99010 × ICP 5529

From: An “Axiom Cajanus SNP Array” based high density genetic map and QTL mapping for high-selfing flower and seed quality traits in pigeonpea

QTL ID

Trait name

CcLG

Position (cM)

Left marker

Right marker

LOD

PVE(%)

Add

Left CI

Right CI

qCl3.1

Cleisto_Y1

03

1

Affx-123,353,193

Affx-123,309,962

32.0

9.1

0.2

0.0

1.5

qCl3.2

Cleisto_Y1

03

85

Affx-123,348,752

Affx-123,306,383

26.5

38.0

−0.3

82.5

85.5

qCl6.1

Cleisto_Y1

06

15

Affx-123,312,002

Affx-123,348,721

7.2

19.7

−0.2

14.5

15.5

qCl10.1

Cleisto_Y1

10

3

Affx-123,353,812

Affx-123,311,709

38.1

9.1

0.2

2.5

3.5

qCl3.2

Cleisto_Y2

03

82

Affx-123,348,752

Affx-123,306,383

466.2

50.6

−0.5

79.5

84.5

qShS6.2

ShS_Y1

06

11

Affx-123,310,260

Affx-123,332,664

6.0

33.3

−0.3

10.5

11.5

qShS6.1

ShS_Y2

06

8

Affx-123,342,177

Affx-123,320,773

9.0

37.2

−0.3

6.5

8.5

qShS9.1

ShS_Y2

09

2

Affx-123,351,506

Affx-123,335,276

3.4

11.8

0.2

1.5

3.5

qSS6.1

SS_Y2

06

15

Affx-123,312,002

Affx-123,348,721

5.1

29.5

−1.4

14.5

15.5

qSS6.1

SS_Y1 + Y2

06

15

Affx-123,312,002

Affx-123,348,721

4.6

33.9

−1.2

14.5

15.5