Table 3 Homozygous non-synonymous variants in effector genes found only in non-PCN species
From: What determines host specificity in hyperspecialized plant parasitic nematodes?
Gene description | SeqID | Pos1 | Ref2 | G. mexicana 3 | G. tabacum 3 |
|---|---|---|---|---|---|
Chorismate mutase | GROS_g02441.t1 | 50 66 118 | His Glu GluGlu | Pro Lys LysLys | Pro Lys LysLys |
Skp1 | GROS_g04817.t1 | 84 | Ala | Val | Val |
Ubiquitin carboxyl-terminal hydrolase | GROS_g05177.t1 | 810 | GlyLeu | AlaLeu | GluMet |
Pectate lyase 1 | GROS_g07968.t1 | 212 | Gly | Lys | Lys |
PLP synthase | GROS_g08956.t1 | 280 | Ala | Ser | Ser |
Glutathione S-transferase | GROS_g10872.t1 | 64 | Pro | Gln | Leu |
1773 | MetTrpLysPro | MetTrpLysSer | Ser | ||
β-1,4-endoglucanase | GROS_g11200.t1 | 386 | Ile | Lys | Lys |
Putative gland protein G19B10 | GROS_g13121.t1 | 100 | ArgLeu | HisLeu | SerSer |
RBP-1 | GROS_g14157.t1 | 90 | Gly | Cys | Arg |
RBP-1 | GROS_g14180.t1 | 222 | GluPhe | LysSer | LysPhe |