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Table 3 Homozygous non-synonymous variants in effector genes found only in non-PCN species

From: What determines host specificity in hyperspecialized plant parasitic nematodes?

Gene description SeqID Pos1 Ref2 G. mexicana 3 G. tabacum 3
Chorismate mutase GROS_g02441.t1 50
66
118
His
Glu
GluGlu
Pro
Lys
LysLys
Pro
Lys
LysLys
Skp1 GROS_g04817.t1 84 Ala Val Val
Ubiquitin carboxyl-terminal hydrolase GROS_g05177.t1 810 GlyLeu AlaLeu GluMet
Pectate lyase 1 GROS_g07968.t1 212 Gly Lys Lys
PLP synthase GROS_g08956.t1 280 Ala Ser Ser
Glutathione S-transferase GROS_g10872.t1 64 Pro Gln Leu
1773 MetTrpLysPro MetTrpLysSer Ser
β-1,4-endoglucanase GROS_g11200.t1 386 Ile Lys Lys
Putative gland protein G19B10 GROS_g13121.t1 100 ArgLeu HisLeu SerSer
RBP-1 GROS_g14157.t1 90 Gly Cys Arg
RBP-1 GROS_g14180.t1 222 GluPhe LysSer LysPhe
  1. 1 Position refers to localisation in amino acid chain
  2. 2 Amino acid present in the reference
  3. 3 Amino acid predicted different from the G. rostochiensis reference transcriptome