Table 1 Summary of motif matches in SalMotifDB by species. Motifs were mapped to promoter regions spanning − 1000/+ 200 bps up−/down-stream of transcription start sites (FIMO P-value < 0.0001). Numbers are given for all motifs as well as for central motifs (non-redundant) and are furthermore divided into numbers were all matches to a promoter is counted (Motif matches) and numbers were only one match per promoter is counted (Gene matches)
From: SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes
All motifs | Central motifs | ||||
|---|---|---|---|---|---|
Species | Genes | Motif matches | Gene matches | Motif matches | Gene matches |
Arctic char (Salvelinus alpinus) | 42,439 | 83,048,193 | 65,471,635 | 23,860,740 | 18,622,927 |
Atlantic salmon (Salmo salar) | 81,586 | 118,076,727 | 89,320,019 | 33,945,569 | 25,359,764 |
Chinook salmon (Oncorhynchus tshawytscha) | 48,724 | 92,515,215 | 71,056,812 | 26,665,761 | 20,186,660 |
Coho salmon (Oncorhynchus kisutch) | 46,109 | 88,330,829 | 68,692,831 | 25,395,939 | 19,551,420 |
Rainbow trout (Oncorhynchus mykiss) | 55,685 | 88,139,627 | 70,459,150 | 25,150,603 | 20,018,446 |