Chomicki G, Coiro M, Renner SS. Evolution and ecology of plant architecture: integrating insights from the fossil record, extant morphology, developmental genetics and phylogenies. Ann Bot. 2017;120:855–91.
Article
PubMed
PubMed Central
Google Scholar
McSteen P, Leyser O. Shoot branching. Annu Rev Plant Biol. 2005;56:353–74.
Article
CAS
PubMed
Google Scholar
Conn A, Pedmale UV, Chory J, Stevens CF, Navlakha S. A statistical description of plant shoot architecture. Curr Biol. 2017;27:2078–88.
Article
CAS
PubMed
PubMed Central
Google Scholar
Sussex IM, Kerk NM. The evolution of plant architecture. Curr Opin Plant Biol. 2001;4:33–7.
Article
CAS
PubMed
Google Scholar
Barthélémy D, Caraglio Y. Plant architecture: a dynamic, multilevel and comprehensive approach to plant form, structure and ontogeny. Ann Bot. 2007;99:375–407.
Article
PubMed
PubMed Central
Google Scholar
Chen L, Fan J, Hu Z, Huang X, Amombo E, Liu A, Bi A, Chen K, Xie Y, Fu J. Melatonin is involved in regulation of bermudagrass growth and development and response to low K+ stress. Front Plant Sci. 2017;8:2038.
Article
PubMed
PubMed Central
Google Scholar
Rechenthin CA. Elementary morphology of grass growth and how it affects utilization. J Range Manag. 1958;9:167–70.
Article
Google Scholar
Van Tran T, Fukai S, van Herwaarden AF, Lambrides CJ. Physiological basis of sprouting potential in bermudagrass. Agron J. 2017;109:1734–42.
Article
CAS
Google Scholar
Guo Y, Wu Y, Moss JQ, Anderson JA, Zhu L. Genetic variability for adaptive, morphological, and reproductive traits in selected cold-hardy germplasm of common bermudagrass. Crop Sci. 2017;57:S82–8.
Article
Google Scholar
Gitau MM, Fan J, Xie Y, Fu J. Genetic diversity and association mapping of forage quality in diverse bermudagrass accessions. Euphytica. 2017;213:234.
Article
Google Scholar
Dong M, de Kroon H. Plasticity in morphology and biomass allocation in Cynodon dactylon, a grass species forming stolons and rhizomes. Oikos. 1994;70:99–106.
Article
Google Scholar
Guglielmini AC, Satorre EH. Shading effects on spatial growth and biomass partitioning of Cynodon dactylon. Weed Res. 2002;42:123–34.
Article
Google Scholar
Montaldi ER. Gibberellin-sugar interaction regulating the growth habit of bermudagrass (Cynodon dactylon (L) Pers). Cell Mol Life Sci. 1969;25:91–2.
Article
CAS
Google Scholar
Willemoës JG, Beltrano J, Montaldi ER. Diagravitropism in bermudagrass (Cynodon dactylon (L.) Pers.) as determined by a gravitropic and a geoepinastic phenomenon. Plant Sci. 1987;51:187–91.
Article
Google Scholar
Willemoës JG, Beltrano J, Montaldi ER. Stolon differentiation in Cynodon dactylon (L.) Pers. mediated by phytochrome. Environ Exp Bot. 1987;27:15–20.
Article
Google Scholar
Beltrano J, Willemoes J, Montaldi ER, Barreiro R. Photoassimilate partitioning modulated by phytochrome in Bermuda grass (Cynodon dactylon (L) Pers.). Plant Sci. 1991;73:19–22.
Article
CAS
Google Scholar
Balatti PA, Willemöes JG. Role of ethylene in the geotropic response of bermudagrass (Cynodon dactylon L. Pers.) stolons. Plant Physiol. 1989;91:1251–4.
Article
CAS
PubMed
PubMed Central
Google Scholar
Agusti J, Lichtenberger R, Schwarz M, Nehlin L, Greb T. Characterization of transcriptome remodeling during cambium formation identifies MOL1 and RUL1 as opposing regulators of secondary growth. PLoS Genet. 2011;7:e1001312.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kloosterman B, Vorst O, Hall RD, Visser RG, Bachem CW. Tuber on a chip: differential gene expression during potato tuber development. Plant Biotechnol J. 2005;3:505–19.
Article
CAS
PubMed
Google Scholar
Agrawal L, Chakraborty S, Jaiswal DK, Gupta S, Datta A, Chakraborty N. Comparative proteomics of tuber induction, development and maturation reveal the complexity of tuberization process in potato (Solanum tuberosum L.). J Proteome Res. 2008;7:3803–17.
Article
CAS
PubMed
Google Scholar
Miao Y, Zhu Z, Guo Q, Zhu Y, Yang X, Sun Y. Transcriptome analysis of differentially expressed genes provides insight into stolon formation in Tulipa edulis. Front Plant Sci. 2016;7:409.
PubMed
PubMed Central
Google Scholar
Zhu Z, Miao Y, Guo Q, Zhu Y, Yang X, Sun Y. Identification of miRNAs involved in stolon formation in Tulipa edulis by high-throughput sequencing. Front Plant Sci. 2016;7:852.
PubMed
PubMed Central
Google Scholar
Vashisht I, Mishra P, Pal T, Chanumolu S, Singh TR, Chauhan RS. Mining NGS transcriptomes for miRNAs and dissecting their role in regulating growth, development, and secondary metabolites production in different organs of a medicinal herb, Picrorhiza kurroa. Planta. 2015;241:1255–68.
Article
CAS
PubMed
Google Scholar
Fang X, Ma H, Lu D, Yu H, Lai W, Ruan S. Comparative proteomics analysis of proteins expressed in the I-1 and I-2 internodes of strawberry stolons. Proteome Sci. 2011;9:26.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zhang B, Xiao X, Zong J, Chen J, Li J, Guo H, Liu J. Comparative transcriptome analysis provides new insights into erect and prostrate growth in bermudagrass (Cynodon dactylon L.). Plant Physiol Biochem. 2017;121:31–7.
Article
CAS
PubMed
Google Scholar
Beckles DM, Craig J, Smith AM. ADP-glucose pyrophosphorylase is located in the plastid in developing tomato fruit. Plant Physiol. 2001;126:261–6.
Article
CAS
PubMed
PubMed Central
Google Scholar
Turner WL, Knowles VL, Plaxton WC. Cytosolic pyruvate kinase: subunit composition, activity, and amount in developing castor and soybean seeds, and biochemical characterization of the purified castor seed enzyme. Planta. 2005;222:1051–62.
Article
CAS
PubMed
Google Scholar
Zhang B, Liu J. Molecular cloning and sequence variance analysis of the TEOSINTE BRANCHED1 (TB1) gene in bermudagrass [Cynodon dactylon (L.) Pers]. J Plant Physiol. 2018;229:142–50.
Article
CAS
PubMed
Google Scholar
Zhao Y, Du H, Wang Z, Huang B. Identification of proteins associated with water-deficit tolerance in C4 perennial grass species, Cynodon dactylon×Cynodon transvaalensis and Cynodon dactylon. Physiol Plant. 2011;141:40–55.
Article
CAS
PubMed
Google Scholar
Shi H, Ye T, Chan Z. Comparative proteomic responses of two bermudagrass (Cynodon dactylon (L). Pers.) varieties contrasting in drought stress resistance. Plant Physiol Biochem. 2014;82:218–28.
Article
CAS
PubMed
Google Scholar
Ye T, Shi H, Wang Y, Yang F, Chan Z. Contrasting proteomic and metabolomic responses of bermudagrass to drought and salt stresses. Front Plant Sci. 2016;7:1694.
PubMed
PubMed Central
Google Scholar
Hu Z, Liu A, Bi A, Amombo E, Gitaua MM, Huang X, Chen L, Fu J. Identification of differentially expressed proteins in bermudagrass response to cold stress in the presence of ethylene. Environ Exp Bot. 2017;139:67–78.
Article
CAS
Google Scholar
Shi H, Ye T, Chan Z. Comparative proteomic and physiological analyses reveal the protective effect of exogenous polyamines in the bermudagrass (Cynodon dactylon) response to salt and drought stresses. J Proteome Res. 2013;12:4951–64.
Article
CAS
PubMed
Google Scholar
Shi H, Ye T, Zhong B, Liu X, Chan Z. Comparative proteomic and metabolomic analyses reveal mechanisms of improved cold stress tolerance in bermudagrass (Cynodon dactylon (L.) Pers.) by exogenous calcium. J Integr Plant Biol. 2014;56:1064–79.
Article
CAS
PubMed
Google Scholar
Shi H, Wang X, Tan DX, Reiter RJ, Chan Z. Comparative physiological and proteomic analyses reveal the actions of melatonin in the reduction of oxidative stress in Bermuda grass (Cynodon dactylon (L). Pers.). J Pineal Res. 2015;59:120–31.
Article
CAS
PubMed
Google Scholar
Li LQ, Lyu CC, Li JH, Tong Z, Lu YF, Wang XY, Ni S, Yang SM, Zeng FC, Lu LM. Physiological analysis and proteome quantification of Alligator weed stems in response to potassium deficiency stress. Int J Mol Sci. 2019;20:221.
Article
PubMed Central
CAS
Google Scholar
Chen Y, Zhou Q, Tian R, Ma Z, Zhao X, Tang J, Fu Z. Proteomic analysis reveals that auxin homeostasis influences the eighth internode length heterosis in maize (Zea mays). Sci Rep. 2018;8:7159.
Article
PubMed
PubMed Central
CAS
Google Scholar
Lavy M, Estelle M. Mechanisms of auxin signaling. Development. 2016;143:3226–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Choi G, Kim JI, Hong SW, Shin B, Choi G, Blakeslee JJ, Murphy AS, Seo YW, Kim K, Koh EJ, Song PS, Lee H. A possible role for NDPK2 in the regulation of auxin-mediated responses for plant growth and development. Plant Cell Physiol. 2005;46:1246–54.
Article
CAS
PubMed
Google Scholar
Yang X, Song L, Xue HW. Membrane steroid binding protein 1 (MSBP1) stimulates tropism by regulating vesicle trafficking and auxin redistribution. Mol Plant. 2008;1:1077–87.
Article
CAS
PubMed
Google Scholar
Luo Y, Qin G, Zhang J, Liang Y, Song Y, Zhao M, Tsuge T, Aoyama T, Liu J, Gu H, Qu LJ. D-myo-inositol-3-phosphate affects phosphatidylinositol-mediated endomembrane function in Arabidopsis and is essential for auxin-regulated embryogenesis. Plant Cell. 2011;23:1352–72.
Article
CAS
PubMed
PubMed Central
Google Scholar
McAdam EL, Meitzel T, Quittenden LJ, Davidson SE, Dalmais M, Bendahmane AI, Thompson R, Smith JJ, Nichols DS, Urquhart S, Gélinas-Marion A, Aubert G, Ross JJ. Evidence that auxin is required for normal seed size and starch synthesis in pea. New Phytol. 2017;216:193–204.
Article
CAS
PubMed
Google Scholar
Morris DA, Arthur ED. Auxin-induced assimilate translocation in the bean stem (Phaseolus vulgaris L.). Plant Growth Regul. 1987;5:169–81.
Article
CAS
Google Scholar
Ferreira SJ, Senning M, Sonnewald S, Kessling PM, Goldstein R, Sonnewald U. Comparative transcriptome analysis coupled to X-ray CT reveals sucrose supply and growth velocity as major determinants of potato tuber starch biosynthesis. BMC Genomics. 2010;11:93.
Article
PubMed
PubMed Central
CAS
Google Scholar
Dong T, Zhu M, Yu J, Han R, Tang C, Xu T, Liu J, Li Z. RNA-Seq and iTRAQ reveal multiple pathways involved in storage root formation and development in sweet potato (Ipomoea batatas L.). BMC Plant Biol. 2019;19:136.
Article
PubMed
PubMed Central
Google Scholar
Li X, Wang C, Cheng J, Zhang J, da Silva JA, Liu X, Duan X, Li T, Sun H. Transcriptome analysis of carbohydrate metabolism during bulblet formation and development in Lilium davidii var unicolor. BMC Plant Biol. 2014;14:358.
Article
PubMed
PubMed Central
CAS
Google Scholar
Thalmann M, Santelia D. Starch as a determinant of plant fitness under abiotic stress. New Phytol. 2017;214:943–51.
Article
CAS
PubMed
Google Scholar
Sturm A, Tang GQ. The sucrose-cleaving enzymes of plants are crucial for development, growth and carbon partitioning. Trends Plant Sci. 1999;4:401–7.
Article
CAS
PubMed
Google Scholar
Vernoud V, Horton AC, Yang Z, Nielsen E. Analysis of the small GTPase gene superfamily of Arabidopsis. Plant Physiol. 2003;131:1191–208.
Article
CAS
PubMed
PubMed Central
Google Scholar
Milne RJ, Perroux JM, Rae AL, Reinders A, Ward JM, Offler CE, Patrick JW, Grof CP. Sucrose transporter localization and function in phloem unloading in developing stems. Plant Physiol. 2017;173:1330–41.
Article
CAS
PubMed
Google Scholar
Gao L, Lu Z, Ding L, Guo J, Wang M, Ling N, Guo S, Shen Q. Role of aquaporins in determining carbon and nitrogen status in higher plants. Int J Mol Sci. 2018;19:35.
Article
PubMed Central
CAS
Google Scholar
Simpson C, Thomas C, Findlay K, Bayer E, Maule AJ. An Arabidopsis GPI-anchor plasmodesmal neck protein with callose binding activity and potential to regulate cell-to-cell trafficking. Plant Cell. 2009;21:581–94.
Article
CAS
PubMed
PubMed Central
Google Scholar
Nguyen TH, Huang S, Meynard D, Chaine C, Michel R, Roelfsema MRG, Guiderdoni E, Sentenac H, Véry AA. A dual role for the OsK5.2 ion channel in stomatal movements and K+ loading into xylem sap. Plant Physiol. 2017;174:2409–18.
Article
CAS
PubMed
PubMed Central
Google Scholar
Chen TM, Brown RH, Black CC. Photosynthetic activity of chloroplasts isolated from bermudagrass (Cynodon dactylon L.), a species with a high photosynthetic capacity. Plant Physiol. 1969;44:649–54.
Article
CAS
PubMed
PubMed Central
Google Scholar
Castro-Díez P, Puyravaud JP, Cornelissen JH, Villar-Salvador P. Stem anatomy and relative growth rate in seedlings of a wide range of woody plant species and types. Oecologia. 1998;116:57–66.
Article
PubMed
Google Scholar
Steppe K, Sterck F, Deslauriers A. Diel growth dynamics in tree stems: linking anatomy and ecophysiology. Trends Plant Sci. 2015;20:335–43.
Article
CAS
PubMed
Google Scholar
Vandenbussche F, Tilbrook K, Fierro AC, Marchal K, Poelman D, Van Der Straeten D, Ulm R. Photoreceptor-mediated bending towards UV-B in Arabidopsis. Mol Plant. 2014;7:1041–52.
Article
CAS
PubMed
Google Scholar
Kato T, Morita MT, Fukaki H, Yamauchi Y, Uehara M, Niihama M, Tasaka M. SGR2, a phospholipase-like protein, and ZIG/SGR4, a SNARE, are involved in the shoot gravitropism of Arabidopsis. Plant Cell. 2002;14:33–46.
Article
CAS
PubMed
PubMed Central
Google Scholar
Yuen CY, Pearlman RS, Silo-Suh L, Hilson P, Carroll KL, Masson PH. WVD2 and WDL1 modulate helical organ growth and anisotropic cell expansion in Arabidopsis. Plant Physiol. 2003;131:493–506.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tao JJ, Cao YR, Chen HW, Wei W, Li QT, Ma B, Zhang WK, Chen SY, Zhang JS. Tobacco translationally controlled tumor protein interacts with ethylene receptor tobacco histidine kinase1 and enhances plant growth through promotion of cell proliferation. Plant Physiol. 2015;169:96–114.
Article
CAS
PubMed
PubMed Central
Google Scholar
Coates JC, Laplaze L, Haseloff J. Armadillo-related proteins promote lateral root development in Arabidopsis. Proc Natl Acad Sci U S A. 2006;103:1621–6.
Article
CAS
PubMed
PubMed Central
Google Scholar
Harlan JR, de Wet JMJ. Sources of variation in Cynodon dactylon (L). Pers Crop Sci. 1969;9:774–8.
Article
Google Scholar
Wu YQ, Taliaferro CM, Martin DL, Anderson JA, Anderson MP. Genetic variability and relationships for adaptive, morphological, and biomass traits in Chinese bermudagrass accessions. Crop Sci. 2007;47:1985–94.
Article
Google Scholar
Zheng Y, Xu S, Liu J, Zhao Y, Liu J. Genetic diversity and population structure of Chinese natural bermudagrass [Cynodon dactylon (L.) Pers.] germplasm based on SRAP markers. PLoS One. 2017;12:e0177508.
Article
PubMed
PubMed Central
CAS
Google Scholar
Jewell MC, Zhou Y, Loch DS, Godwin ID, Lambrides CJ. Maximizing genetic, morphological, and geographic diversity in a core collection of Australian bermudagrass. Crop Sci. 2012;52:879–89.
Article
CAS
Google Scholar
Karaca M, Saha S, Zipf A, Jenkins JN, Lang DJ. Genetic diversity among forage bermudagrass (Cynodon spp.). Crop Sci. 2002;42:2118–27.
Article
CAS
Google Scholar
Wu YQ, Taliaferro CM, Bai GH, Martin DL, Anderson JA, Anderson MP, Edwards RM. Genetic analyses of Chinese Cynodon accessions by flow cytometry and AFLP markers. Crop Sci. 2006;46:917–26.
Article
Google Scholar
Li H, Liu L, Lou Y, Hu T, Fu J. Genetic diversity of Chinese natural bermudagrass (Cynodon dactylon) germplasm using ISSR markers. Sci Hortic. 2011;127:555–61.
Article
CAS
Google Scholar
Farsani TM, Etemadi N, Sayed-Tabatabaei BE, Talebi M. Assessment of genetic diversity of bermudagrass (Cynodon dactylon) using ISSR markers. Int J Mol Sci. 2012;13:383–92.
Article
CAS
PubMed
Google Scholar
Wang Z, Liao L, Yuan X, Guo H, Guo A, Liu J. Genetic diversity analysis of Cynodon dactylon (bermudagrass) accessions and cultivars from different countries based on ISSR and SSR markers. Biochem Syst Ecol. 2013;46:108–15.
Article
CAS
Google Scholar
Kang GZ, Wang YH, Liu C, Shen BQ, Zheng BB, Feng W, Guo TC. Difference in AGPase subunits could be associated with starch accumulation in grains between two wheat cultivars. Plant Growth Regul. 2010;61:61–6.
Article
CAS
Google Scholar
Petreikov M, Yeselson L, Shen S, Levin I, Schaffer AA, Efrati A, Bar M. Carbohydrate balance and accumulation during development of near-isogenic tomato lines differing in the AGPase-L1 allele. J Am Soc Hortic Sci. 2009;134:134–40.
Article
Google Scholar
Bourgis F, Kilaru A, Cao X, Ngando-Ebongue GF, Drira N, Ohlrogge JB, Arondel V. Comparative transcriptome and metabolite analysis of oil palm and date palm mesocarp that differ dramatically in carbon partitioning. Proc Natl Acad Sci U S A. 2011;108:12527–32.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wang F, Smith AG, Brenner ML. Temporal and spatial expression pattern of sucrose synthase during tomato fruit development. Plant Physiol. 1994;104:535–40.
Article
CAS
PubMed
PubMed Central
Google Scholar
Clegg KM. The application of the anthrone reagent to the estimation of starch in cereals. J Sci Food Agr. 1956;7:40–4.
Article
CAS
Google Scholar
Yao Y, Yang YW, Liu JY. An efficient protein preparation for proteomic analysis of developing cotton fibers by 2-DE. Electrophoresis. 2006;27:4559–69.
Article
CAS
PubMed
Google Scholar
Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976;72:248–54.
Article
CAS
PubMed
Google Scholar
Wang J, Yu L, Huang X, Wang Y, Zhao J. Comparative proteome analysis of saccular intracranial aneurysms with iTRAQ quantitative proteomics. J Proteome. 2016;130:120–8.
Article
CAS
Google Scholar
Zhang B, Liu J, Wang X, Wei Z. Full-length RNA sequencing reveals unique transcriptome composition in bermudagrass. Plant Physiol Biochem. 2018;132:95–103.
Article
CAS
PubMed
Google Scholar
Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S. AmiGO hub; web presence working group. AmiGO: online access to ontology and annotation data. Bioinformatics. 2009;25:28–9.
Article
CAS
Google Scholar
Kanehisa M, Goto S. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000;28:27–30.
Article
CAS
PubMed
PubMed Central
Google Scholar
Xie C, Mao X, Huang J, Ding Y, Wu J, Dong S, Kong L, Gao G, Li CY, Wei L. KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases. Nucleic Acids Res. 2011;39:W316–22.
Article
CAS
PubMed
PubMed Central
Google Scholar
Chen Y, Tan Z, Hu B, Yang Z, Xu B, Zhuang L, Huang B. Selection and validation of reference genes for target gene analysis with quantitative RT-PCR in leaves and roots of bermudagrass under four different abiotic stresses. Physiol Plant. 2015;155:138–48.
Article
CAS
PubMed
Google Scholar