Fig. 5
Manhattan plot and LD block of Gm5_27111367 (Gm5_26143758~28,193,474), Gm11_10629613 (Gm11_9712686~11,611,890), Gm11_10950924 (Gm11_9745828~11,940,522) and Gm19_34768458 (Gm19_33680089~35,785,309). Black arrow indicated target SNPs. The up panel was the Manhattan plots of negative log10-transformed P-values vs. SNPs, the significant (−log10P > 3.75) or extremely significant (−log10P > 4.44) threshold was denoted by the green or red line. The down panel was haplotype block based on pairwise linkage disequilibrium r2 values. R1: Flowering time; R2: Full bloom; R3: Beginning pod; R4: Full pod; R5: Beginning seed; R6: Full seed. 2015 H: 2015 Harbin; 2016 H: 2016 Harbin; 2015 C: 2015 Changchun; 2016 C: 2016 Changchun; 2015 S: 2015 Shenyang; 2016 S: 2016 Shenyang