Nucleotide diversity of functionally different groups of immune response genes in Old World camels based on newly annotated and reference-guided assemblies

Table 1 Assembly statistics for the CamBac1 (GCF_000767855.1) and CamFer1 (GCF_000311805.1) and after improvement (CamBac2 and CamFer2, respectively) with reference-guided assembly with Ragout [16] using Progressive Cactus [17] alignments to CamDro3 then filling in gaps with GapFiller [18]

^aN90/N50 are the scaffold or contig lengths such that the sum of the lengths of all scaffolds or contigs of this size or larger is equal to 90/50% of the total assembly length
^bL90/L50 are the smallest number of scaffolds or contigs that make up at least 90/50% of the total assembly length
^cUsing minimum gap length of 10 bp
^dBUSCOs: Benchmarking Universal Single-Copy Orthologs [19] are mammalian BUSCOs from OrthoDB v. 9.1 genes [20]

ISSN: 1471-2164