Table 3 Means with 95% bootstrap confidence limits (CL, see Methods) of nucleotide diversity for alignments made with non-synonymous and synonymous SNPs and indels and only non-synonymous SNPs for: DROM (dromedary; Camelus dromedarius), DC (domestic Bactrian camel; Camelus bactrianus), and WC (wild camel; Camelus ferus) gene groups. AD for adaptive genes, IN for innate genes, MHC for MHC class I and II genes, and RG for rest of genome genes. Rest-of-genome-genes correspond to those genes which are not classified as adaptive or innate IR genes (see Methods)
Variant type | Species | Gene groups | Mean | 95% lower CL | 95% upper CL |
|---|---|---|---|---|---|
SNPs and indels | DROM | MHC | 6.26E-04 | 1.83E-04 | 9.65E-04 |
SNPs and indels | DROM | AD | 8.81E-05 | 5.70E-05 | 1.14E-04 |
SNPs and indels | DROM | IN | 6.81E-05 | 4.74E-05 | 8.49E-05 |
SNPs and indels | DROM | RG | 6.55E-05 | 6.22E-05 | 6.87E-05 |
SNPs and indels | DC | MHC | 1.35E-03 | 5.58E-04 | 2.04E-03 |
SNPs and indels | DC | AD | 2.97E-04 | 2.11E-04 | 3.64E-04 |
SNPs and indels | DC | IN | 1.94E-04 | 1.61E-04 | 2.23E-04 |
SNPs and indels | DC | RG | 1.66E-04 | 1.60E-04 | 1.71E-04 |
SNPs and indels | WC | MHC | 2.73E-04 | 9.06E-06 | 4.77E-04 |
SNPs and indels | WC | AD | 1.06E-04 | 4.52E-05 | 1.51E-04 |
SNPs and indels | WC | IN | 8.36E-05 | 5.45E-05 | 1.08E-04 |
SNPs and indels | WC | RG | 6.71E-05 | 6.24E-05 | 7.13E-05 |
Non synonymous SNPs | DROM | MHC | 1.72E-04 | -7.09E-05 | 3.22E-04 |
Non synonymous SNPs | DROM | AD | 1.58E-05 | −8.83E-06 | 2.80E-05 |
Non synonymous SNPs | DROM | IN | 4.79E-06 | 1.29E-06 | 7.42E-06 |
Non synonymous SNPs | DROM | RG | 1.28E-05 | 1.13E-05 | 1.42E-05 |
Non synonymous SNPs | DC | MHC | 2.07E-04 | 6.94E-05 | 3.27E-04 |
Non synonymous SNPs | DC | AD | 2.63E-05 | 1.04E-05 | 3.80E-05 |
Non synonymous SNPs | DC | IN | 2.26E-05 | 9.31E-06 | 3.17E-05 |
Non synonymous SNPs | DC | RG | 2.97E-05 | 2.70E-05 | 3.25E-05 |
Non synonymous SNPs | WC | MHC | 7.23E-05 | −1.52E-05 | 1.45E-04 |
Non synonymous SNPs | WC | AD | 2.61E-05 | −2.17E-06 | 4.37E-05 |
Non synonymous SNPs | WC | IN | 1.23E-05 | 4.52E-06 | 1.87E-05 |
Non synonymous SNPs | WC | RG | 1.72E-05 | 1.45E-05 | 1.99E-05 |