|
Sequencing Platform
|
Sample
|
Reads Number (M)
|
Clean Bases (G)
|
Q20 (%)
|
Q30 (%)
|
Total number of unigene
|
Total length of unigene (bp)
|
Mean length of unigene (bp)
|
N50
|
GC (%)
|
|---|
|
Ilumina HiSeq
|
Leaf
|
41.14
|
6.17
|
96.95
|
92.30
|
50394
|
82508501
|
1380
|
2201
|
40.64
|
|
Flower
|
41.35
|
6.20
|
97.29
|
93.06
|
62426
|
95564612
|
1530
|
2335
|
40.13
|
|
Stem
|
40.60
|
6.09
|
97.29
|
93.11
|
65762
|
98612970
|
1499
|
2372
|
40.39
|
|
Fruit
|
40.59
|
6.09
|
97.45
|
93.39
|
66668
|
81799852
|
1226
|
2077
|
41.93
|
|
Root
|
40.64
|
6.10
|
97.44
|
93.43
|
45459
|
57083335
|
1255
|
2100
|
41.10
|
|
Hiseq summary
|
–
|
–
|
–
|
–
|
–
|
113008
|
175268545
|
1550
|
2599
|
40.99
|
|
PacBio SMRT
|
Mixed tissue
|
6.75
|
11.28
|
–
|
–
|
22884
|
82035635
|
3584
|
5068
|
43.55
|
|
Calibrated PacBio by Illumina
| |
–
|
–
|
–
|
–
|
20201
|
72872459
|
3607
|
5076
|
43.55
|
- Q20 and Q30 on Illumina platform correspond to the predicted base call error rate of 1% and 0.1%, respectively
- N50: The minimum contig length needed to cover 50% of the transcriptome
