Table 1 Sequencing metrics of the 18 RNA-seq libraries
From: Global mRNA and microRNA expression dynamics in response to anthracnose infection in sorghum
Genotypes | Treatment | Library | Total paired reads | Mapping to sorghum | Mapping to C. sublineolum |
|---|---|---|---|---|---|
SC283 | 0H | SC283–0-1 | 44,696,003 | 43,447,416(94.2%) | 8006 (0.0%) |
SC283–0-2 | 44,603,755 | 43,369,374 (94.1%) | 12,066 (0.0%) | ||
SC283–0-3 | 49,240,285 | 48,017,854 (94.6%) | 63,971 (0.1%) | ||
total | 138,540,043 | 134,834,644 (94.3%) | 84,043 (0.0%) | ||
24H | SC283–24-1 | 42,612,593 | 40,937,987 (92.6%) | 76,168 (0.2%) | |
SC283–24-2 | 40,790,385 | 39,287,579 (93.3%) | 56,123 (0.1%) | ||
SC283–24-3 | 36,778,762 | 35,867,807 (94.2%) | 47,531 (0.1%) | ||
total | 120,181,740 | 116,093,373 (93.4%) | 179,822 (0.1%) | ||
48H | SC283–48-1 | 38,087,215 | 36,554,560 (93.1%) | 8057 (0.0%) | |
SC283–48-2 | 39,052,074 | 37,430,357 (93.5%) | 167,268 (0.4%) | ||
SC283–48-3 | 38,609,348 | 37,148,472 (93.0%) | 5634 (0.0%) | ||
total | 115,748,637 | 111,133,389 (93.2%) | 180,959 (0.1%) | ||
TAM428 | 0H | TAM428–0-1 | 43,196,291 | 42,320,251 (95.4%) | 7799 (0.0%) |
TAM428–0-2 | 41,822,181 | 41,008,508 (95.3%) | 2257 (0.0%) | ||
TAM428–0-3 | 45,624,005 | 44,625,471 (94.2%) | 1677 (0.0%) | ||
total | 130,642,477 | 127,954,230 (95.0%) | 11,733 (0.0%) | ||
24H | TAM428–24-1 | 37,771,230 | 36,513,716 (93.4%) | 279,542 (0.7%) | |
TAM428–24-2 | 38,967,041 | 38,086,627 (95.3%) | 29,680 (0.1%) | ||
TAM428–24-3 | 38,050,166 | 37,120,324 (95.1%) | 46,151 (0.1%) | ||
total | 114,788,437 | 111,720,667 (94.6%) | 355,373 (0.3%) | ||
48H | TAM428–48-1 | 35,565,060 | 33,495,192 (89.9%) | 964,049 (2.7%) | |
TAM428–48-2 | 40,030,840 | 35,770,399 (87.4%) | 2,812,493 (7.0%) | ||
TAM428–48-3 | 39,466,219 | 31,793,828 (78.3%) | 5,775,934 (14.6%) | ||
total | 115,062,119 | 101,059,419 (85.2%) | 9,552,476 (8.1%) |