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Table 2 Details of SNPs significantly associated with two P efficiency related traits in natural population

From: Identification of loci and candidate gene GmSPX-RING1 responsible for phosphorus efficiency in soybean via genome-wide association analysis

Trait Marker Chr.a Position P valueb R2(%)c Exp.d Related QTLs in previous studies
SDWM AX-93639768 11 17,540,742 2.98 × 10− 06-3.95 × 10− 06 6.92–6.00 E2, Meane  
SDWM AX-93793030 11 18,161,544 7.73 × 10− 07-4.00 × 10− 06 7.80–6.00 E2, Meane  
SDWM AX-93793042 11 18,125,598 7.50 × 10−07-2.57 × 10− 06 7.81–6.25 E2, Meane  
SDWM AX-93793048 11 18,114,663 6.91 × 10− 07-3.76 × 10− 06 7.87–6.03 E2, Meane  
SDWM AX-93793067 11 18,066,013 2.72 × 10−06-3.21 × 10− 06 6.98–6.12 E2, Meane  
SDWM AX-93793115 11 17,631,513 2.64 × 10−06-4.05 × 10− 06 7.00–5.99 E2, Meane  
SDWM AX-93793132 11 17,435,053 2.95 × 10− 06-4.19 × 10− 06 6.93–5.97 E2, Meane  
SDWM AX-93793133 11 17,434,154 4.65 × 10−06-4.57 × 10− 06 6.64–5.92 E2, Meane  
SDWM AX-93793134 11 17,413,322 2.45 × 10−06-2.99 × 10−07 7.05–7.49 E2, Meand  
SDWM AX-93793177 11 16,804,174 2.98 × 10−06-3.95 × 10− 06 6.92–6.00 E2, Meane  
SDWM AX-93793182 11 16,706,297 2.28 × 10−06-3.21 × 10− 06 7.09–6.12 E2, Meane  
SDWM AX-93793189 11 16,633,364 2.61 × 10−06-4.29 × 10− 06 7.01–5.96 E2, Meane  
SDWM AX-93793209 11 16,255,300 2.82 × 10−06-3.75 × 10− 06 6.96–6.03 E2, Meane  
SDWM AX-93793218 11 4,967,418 2.18 × 10−06-4.15 × 10− 06 7.12–5.98 E2, Meane  
SDWM AX-93793227 11 16,091,168 2.95 × 10−06-4.19 × 10− 06 6.93–5.97 E2, Meane  
SDWM AX-94089576 11 18,592,188 1.02 × 10−06-4.30 × 10− 06 7.61–5.95 E2, Meane  
SDWM AX-94089731 11 18,163,010 6.31 × 10−07-2.57 × 10−06 7.93–6.20 E2, Meane  
SDWM AX-94089820 11 17,510,382 9.65 × 10−07-9.73 × 10− 07 7.65–6.81 E2, Meane  
SDWM AX-94089832 11 17,366,064 3.19 × 10−07-1.97 × 10−06 8.37–6.40 E2, Meane  
SDWM AX-94089845 11 17,134,392 2.95 × 10−06-4.19 × 10− 06 6.93–5.97 E2, Meane  
SDWM AX-94089894 11 16,493,472 2.34 × 10−06-4.55 × 10− 06 7.08–5.92 E2, Meane  
SDWM AX-94089934 11 15,954,738 2.98 × 10−06-3.95 × 10− 06 6.92–6.00 E2, Meane  
SPP AX-93733438 6 38,730,523 1.84 × 10−07-1.18 × 10−06 12.33–10.28 E2, Meane rdwnpC2–06, puenpC2–05, puenpC2–06 (Satt489-Sat_251)
SPP AX-93636685 10 1,592,679 2.95 × 10−07-1.18 × 10−09 12.64–16.65 E1, E2, Meane qCHL-O-1 (Satt487-Sat_108), qR/S-O-1 (Satt445-Satt487)
SPP AX-93636692 10 1,606,922 2.07 × 10−06-1.92 × 10−08 10.73–14.01 E1, E2, Meane
SPP AX-93932863 10 1,591,041 2.48 × 10−07-9.63 × 10−10 12.81–16.84 E1, E2, Meane
SPP AX-93932874 10 1,627,680 1.21 × 10−07-5.36 × 10−11 13.53–19.65 E1, E2, Meane
SPP AX-93636690 10 1,605,716 1.23 × 10−06-5.96 × 10−07 10.57–10.88 E2, Meane
SPP AX-93774132 10 1,496,425 5.57 × 10−08-4.29 × 10−07 13.45–11.18 E2, Meane
SPP AX-93774138 10 1,507,397 5.57 × 10−08-4.29 × 10−07 13.45–11.18 E2, Meane
SPP AX-93774183 10 1,604,160 3.17 × 10−06-3.41 × 10−06 9.71–9.34 E2, Meane
SPP AX-93774188 10 1,616,592 2.36 × 10−07-3.96 × 10− 07 12.09–11.25 E2, Meane
SPP AX-93932870 10 1,606,515 3.38 × 10−06-4.57 × 10− 06 9.65–9.09 E2, Meane
SPP AX-94070704 10 1,510,255 7.67 × 10−08-1.87 × 10−07 13.15–11.92 E2, Meane
SPP AX-94070763 10 1,625,676 6.27 × 10−07-1.66 × 10−06 11.19–9.97 E2, Meane
  1. SDWP shoot dry weight under +P condition, SDWM shoot dry weight under -P condition, SPP shoot P concentration under +P condition, SPM shoot P concentration under -P condition, SPAP shoot P accumulation under +P condition, SPAM shoot P accumulation under -P condition. Position: soybean genome assembly Glycine max Wm82.a2.v1. E1/E2: first/second independent hydroponic culture. a: chromosome; b: significant at P ≤ 4.82 × 10−6; c: percentage of phenotypic variation explained by the SNP; d: experiment; e: Mean, average of E1 and E2
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